LICENSE
README.md
pyproject.toml
setup.py
src/numorph_3dunet/__init__.py
src/numorph_3dunet/__main__.py
src/numorph_3dunet/cli.py
src/numorph_3dunet/version.py
src/numorph_3dunet.egg-info/PKG-INFO
src/numorph_3dunet.egg-info/SOURCES.txt
src/numorph_3dunet.egg-info/dependency_links.txt
src/numorph_3dunet.egg-info/entry_points.txt
src/numorph_3dunet.egg-info/requires.txt
src/numorph_3dunet.egg-info/top_level.txt
src/numorph_3dunet/nuclei/__init__.py
src/numorph_3dunet/nuclei/generate_chunks.py
src/numorph_3dunet/nuclei/generate_chunks2.py
src/numorph_3dunet/nuclei/img_utils.py
src/numorph_3dunet/nuclei/predict.py
src/numorph_3dunet/nuclei/predict_validation.py
src/numorph_3dunet/nuclei/preprocess.py
src/numorph_3dunet/nuclei/read_params.py
src/numorph_3dunet/nuclei/reannotate_centroids.py
src/numorph_3dunet/nuclei/remeasure_centroids.py
src/numorph_3dunet/nuclei/train_isensee2017.py
src/numorph_3dunet/nuclei/train_isensee2017_2.py
src/numorph_3dunet/nuclei/train_isensee2017_3.py
src/numorph_3dunet/unet3d/__init__.py
src/numorph_3dunet/unet3d/augment.py
src/numorph_3dunet/unet3d/data.py
src/numorph_3dunet/unet3d/generator.py
src/numorph_3dunet/unet3d/generator2.py
src/numorph_3dunet/unet3d/metrics.py
src/numorph_3dunet/unet3d/normalize.py
src/numorph_3dunet/unet3d/predict_ok.py
src/numorph_3dunet/unet3d/prediction.py
src/numorph_3dunet/unet3d/prediction2.py
src/numorph_3dunet/unet3d/train_isensee2017.py
src/numorph_3dunet/unet3d/training.py
src/numorph_3dunet/unet3d/utils/__init__.py
src/numorph_3dunet/unet3d/utils/patches.py
src/numorph_3dunet/unet3d/utils/sitk_utils.py
src/numorph_3dunet/unet3d/utils/utils.py
src/numorph_3dunet/unet3d/utils/nilearn_custom_utils/__init__.py
src/numorph_3dunet/unet3d/utils/nilearn_custom_utils/nilearn_utils.py