LICENSE
README.md
pyproject.toml
release_version.txt
aiagents4pharma/__init__.py
aiagents4pharma.egg-info/PKG-INFO
aiagents4pharma.egg-info/SOURCES.txt
aiagents4pharma.egg-info/dependency_links.txt
aiagents4pharma.egg-info/requires.txt
aiagents4pharma.egg-info/top_level.txt
aiagents4pharma/configs/__init__.py
aiagents4pharma/configs/config.yaml
aiagents4pharma/configs/talk2biomodels/__init__.py
aiagents4pharma/configs/talk2biomodels/agents/__init__.py
aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/__init__.py
aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml
aiagents4pharma/configs/talk2biomodels/tools/__init__.py
aiagents4pharma/configs/talk2biomodels/tools/ask_question/__init__.py
aiagents4pharma/configs/talk2biomodels/tools/ask_question/default.yaml
aiagents4pharma/configs/talk2biomodels/tools/get_annotation/__init__.py
aiagents4pharma/configs/talk2biomodels/tools/get_annotation/default.yaml
aiagents4pharma/talk2biomodels/__init__.py
aiagents4pharma/talk2biomodels/agents/__init__.py
aiagents4pharma/talk2biomodels/agents/t2b_agent.py
aiagents4pharma/talk2biomodels/api/__init__.py
aiagents4pharma/talk2biomodels/api/kegg.py
aiagents4pharma/talk2biomodels/api/ols.py
aiagents4pharma/talk2biomodels/api/uniprot.py
aiagents4pharma/talk2biomodels/models/__init__.py
aiagents4pharma/talk2biomodels/models/basico_model.py
aiagents4pharma/talk2biomodels/models/sys_bio_model.py
aiagents4pharma/talk2biomodels/states/__init__.py
aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py
aiagents4pharma/talk2biomodels/tests/__init__.py
aiagents4pharma/talk2biomodels/tests/test_api.py
aiagents4pharma/talk2biomodels/tests/test_ask_question.py
aiagents4pharma/talk2biomodels/tests/test_basico_model.py
aiagents4pharma/talk2biomodels/tests/test_get_annotation.py
aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py
aiagents4pharma/talk2biomodels/tests/test_integration.py
aiagents4pharma/talk2biomodels/tests/test_param_scan.py
aiagents4pharma/talk2biomodels/tests/test_query_article.py
aiagents4pharma/talk2biomodels/tests/test_search_models.py
aiagents4pharma/talk2biomodels/tests/test_simulate_model.py
aiagents4pharma/talk2biomodels/tests/test_steady_state.py
aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py
aiagents4pharma/talk2biomodels/tools/__init__.py
aiagents4pharma/talk2biomodels/tools/ask_question.py
aiagents4pharma/talk2biomodels/tools/custom_plotter.py
aiagents4pharma/talk2biomodels/tools/get_annotation.py
aiagents4pharma/talk2biomodels/tools/get_modelinfo.py
aiagents4pharma/talk2biomodels/tools/load_arguments.py
aiagents4pharma/talk2biomodels/tools/load_biomodel.py
aiagents4pharma/talk2biomodels/tools/parameter_scan.py
aiagents4pharma/talk2biomodels/tools/query_article.py
aiagents4pharma/talk2biomodels/tools/search_models.py
aiagents4pharma/talk2biomodels/tools/simulate_model.py
aiagents4pharma/talk2biomodels/tools/steady_state.py
aiagents4pharma/talk2cells/__init__.py
aiagents4pharma/talk2cells/agents/__init__.py
aiagents4pharma/talk2cells/agents/scp_agent.py
aiagents4pharma/talk2cells/states/__init__.py
aiagents4pharma/talk2cells/states/state_talk2cells.py
aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py
aiagents4pharma/talk2cells/tools/__init__.py
aiagents4pharma/talk2cells/tools/scp_agent/__init__.py
aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py
aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py
aiagents4pharma/talk2knowledgegraphs/__init__.py
aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py
aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py
aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py
aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py
aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py
aiagents4pharma/talk2knowledgegraphs/tests/__init__.py
aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py
aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py
aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py
aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ollama.py
aiagents4pharma/talk2knowledgegraphs/utils/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py
aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py
aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py
aiagents4pharma/talk2scholars/__init__.py
aiagents4pharma/talk2scholars/agents/__init__.py
aiagents4pharma/talk2scholars/agents/main_agent.py
aiagents4pharma/talk2scholars/agents/s2_agent.py
aiagents4pharma/talk2scholars/configs/__init__.py
aiagents4pharma/talk2scholars/configs/config.yaml
aiagents4pharma/talk2scholars/configs/agents/__init__.py
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/__init__.py
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/__init__.py
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/default.yaml
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/__init__.py
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/default.yaml
aiagents4pharma/talk2scholars/configs/app/__init__.py
aiagents4pharma/talk2scholars/configs/app/frontend/__init__.py
aiagents4pharma/talk2scholars/configs/app/frontend/default.yaml
aiagents4pharma/talk2scholars/configs/tools/__init__.py
aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py
aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml
aiagents4pharma/talk2scholars/configs/tools/search/__init__.py
aiagents4pharma/talk2scholars/configs/tools/search/default.yaml
aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py
aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/default.yaml
aiagents4pharma/talk2scholars/state/__init__.py
aiagents4pharma/talk2scholars/state/state_talk2scholars.py
aiagents4pharma/talk2scholars/tests/__init__.py
aiagents4pharma/talk2scholars/tests/test_langgraph.py
aiagents4pharma/talk2scholars/tools/__init__.py
aiagents4pharma/talk2scholars/tools/s2/__init__.py
aiagents4pharma/talk2scholars/tools/s2/display_results.py
aiagents4pharma/talk2scholars/tools/s2/multi_paper_rec.py
aiagents4pharma/talk2scholars/tools/s2/search.py
aiagents4pharma/talk2scholars/tools/s2/single_paper_rec.py