# Core dependencies (NumPy 2 and pandas 2.x; avoid pandas 3 for ABI compatibility)
numpy>=1.20.0,<3
pandas>=2.2.0,<3
pysam>=0.19.0
requests>=2.26.0
tqdm>=4.62.0
biopython>=1.79
gtfparse>=1.2.0
platformdirs>=3.0.0