Metadata-Version: 2.1
Name: scmeta
Version: 0
Summary: A python package for single-cell metabolism analysis.
Home-page: https://www.sc-meta.org/
License: GPL-3.0-or-later
Keywords: single-cell,metabolism,analysis
Author: EstrellaXD
Author-email: estrellaxd05@gmail.com
Requires-Python: >=3.9,<3.13
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: combat (>=0.3.3,<0.4.0)
Requires-Dist: matplotlib (>=3.7.2,<4.0.0)
Requires-Dist: numpy (>=1.25.2,<2.0.0)
Requires-Dist: pandas (>=2.1.0,<3.0.0)
Requires-Dist: polars (>=0.19.1,<0.20.0)
Requires-Dist: pyrawtools (>=0.2.3,<0.3.0)
Requires-Dist: pythonnet (>=3.0.3,<4.0.0)
Requires-Dist: scikit-learn (>=1.3.0,<2.0.0)
Requires-Dist: scipy (>=1.11.2,<2.0.0)
Requires-Dist: tqdm (>=4.66.1,<5.0.0)
Requires-Dist: umap-learn (>=0.5.4,<0.6.0)
Project-URL: Documentation, https://www.sc-meta.org/
Project-URL: Repository, https://github.com/SCMeTA/SCMeTA
Description-Content-Type: text/markdown

# SCMeTA

SCMeTA is a python library of single-cell meta-analysis tools. It provides a set of functions for single-cell meta-analysis, including data integration, batch effect correction, cell type annotation, cell clustering, cell trajectory inference, and cell type marker identification. It also provides a set of functions for single-cell data visualization, including dimension reduction, cell clustering, cell trajectory inference, and cell type marker identification. 

## Installation

SCMeTA is available on PyPI and can be installed with pip:

```bash
pip install scmeta
```

## Usage

### Data integration

```python

from SCMeTA import Process

sc = Process()

# Load data

sc.load("data/example.RAW")

# Data process

sc.pre_process()
sc.process()
sc.post_process()

```

## Documentation

The official documentation is hosted on Read the Docs: https://sc-meta.com/

## License

SCMeTA is licensed under the GPLv3 license. See the LICENSE file for more details.



