# This file was autogenerated by uv via the following command:
#    uv pip compile --python-version=3.11 ../../pyproject.toml --extra jit -o requirements-jit.txt
alifedata-phyloinformatics-convert==0.19.3
    # via hstrat (../../pyproject.toml)
annotated-types==0.7.0
    # via pydantic
anytree==2.13.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
astropy==7.2.0
    # via hstrat (../../pyproject.toml)
astropy-iers-data==0.2026.2.16.0.48.25
    # via astropy
biopython==1.86
    # via alifedata-phyloinformatics-convert
bitarray==3.8.0
    # via
    #   hstrat (../../pyproject.toml)
    #   bitstring
bitstring==4.3.1
    # via hstrat (../../pyproject.toml)
click==8.3.1
    # via
    #   alifedata-phyloinformatics-convert
    #   keyname
contourpy==1.3.3
    # via matplotlib
cppimport==22.8.2
    # via hstrat (../../pyproject.toml)
cycler==0.12.1
    # via matplotlib
decorator==5.2.1
    # via retry
dendropy==5.0.8
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
deprecated==1.3.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
downstream==1.21.3
    # via hstrat (../../pyproject.toml)
ete3==3.1.3
    # via alifedata-phyloinformatics-convert
filelock==3.24.3
    # via cppimport
fishersrc==0.1.15
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
fonttools==4.61.1
    # via matplotlib
idna==3.11
    # via yarl
interval-search==0.5.2
    # via hstrat (../../pyproject.toml)
iterpop==0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
joblib==1.5.3
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
    #   scikit-learn
joinem==0.11.1
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   phyloframe
keyname==0.6.0
    # via hstrat (../../pyproject.toml)
kiwisolver==1.4.9
    # via matplotlib
lazy-loader==0.4
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   phyloframe
llvmlite==0.46.0
    # via numba
lru-dict==1.4.1
    # via hstrat (../../pyproject.toml)
mako==1.3.10
    # via cppimport
markupsafe==3.0.3
    # via mako
matplotlib==3.10.8
    # via
    #   hstrat (../../pyproject.toml)
    #   seaborn
mmh3==5.2.0
    # via hstrat (../../pyproject.toml)
more-itertools==10.8.0
    # via
    #   hstrat (../../pyproject.toml)
    #   keyname
    #   phyloframe
mpmath==1.3.0
    # via hstrat (../../pyproject.toml)
multidict==6.7.1
    # via yarl
mypy-extensions==1.1.0
    # via typing-inspect
nanto==0.1.1
    # via alifedata-phyloinformatics-convert
networkx==3.6.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
numba==0.63.1
    # via hstrat (../../pyproject.toml)
numpy==2.3.5
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   astropy
    #   biopython
    #   contourpy
    #   downstream
    #   fishersrc
    #   matplotlib
    #   numba
    #   pandas
    #   patsy
    #   phyloframe
    #   pyerfa
    #   scikit-learn
    #   scipy
    #   seaborn
    #   statsmodels
opytional==0.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   downstream
    #   phyloframe
ordered-set==4.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
packaging==26.0
    # via
    #   hstrat (../../pyproject.toml)
    #   astropy
    #   lazy-loader
    #   matplotlib
    #   pandera
    #   statsmodels
pandas==2.3.3
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   phyloframe
    #   seaborn
    #   statsmodels
pandera==0.29.0
    # via hstrat (../../pyproject.toml)
patsy==1.0.2
    # via statsmodels
phyloframe==0.1.0
    # via hstrat (../../pyproject.toml)
pillow==12.1.1
    # via matplotlib
polars==1.36.1
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   joinem
    #   phyloframe
polars-runtime-32==1.36.1
    # via polars
polars-runtime-64==1.36.1
    # via polars
prettytable==3.17.0
    # via hstrat (../../pyproject.toml)
propcache==0.4.1
    # via yarl
py==1.11.0
    # via retry
pyarrow==23.0.1
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
    #   polars
pybind11==3.0.2
    # via cppimport
pydantic==2.12.5
    # via pandera
pydantic-core==2.41.5
    # via pydantic
pyerfa==2.0.1.5
    # via astropy
pyparsing==3.3.2
    # via matplotlib
python-dateutil==2.9.0.post0
    # via
    #   matplotlib
    #   pandas
python-slugify==8.0.4
    # via hstrat (../../pyproject.toml)
pytz==2025.2
    # via pandas
pyyaml==6.0.3
    # via astropy
retry==0.9.2
    # via keyname
safe-assert==0.5.0
    # via hstrat (../../pyproject.toml)
scikit-learn==1.8.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
scipy==1.17.0
    # via
    #   scikit-learn
    #   statsmodels
seaborn==0.13.2
    # via hstrat (../../pyproject.toml)
setuptools==80.10.2
    # via
    #   hstrat (../../pyproject.toml)
    #   dendropy
six==1.17.0
    # via python-dateutil
sortedcontainers==2.4.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   phyloframe
statsmodels==0.14.6
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
text-unidecode==1.3
    # via python-slugify
threadpoolctl==3.6.0
    # via scikit-learn
tqdist==1.0
    # via phyloframe
tqdm==4.67.3
    # via
    #   hstrat (../../pyproject.toml)
    #   joinem
    #   phyloframe
treeswift==1.1.45
    # via alifedata-phyloinformatics-convert
typeguard==4.5.1
    # via pandera
typing-extensions==4.15.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   pandera
    #   phyloframe
    #   pydantic
    #   pydantic-core
    #   typeguard
    #   typing-inspect
    #   typing-inspection
typing-inspect==0.9.0
    # via pandera
typing-inspection==0.4.2
    # via pydantic
tzdata==2025.3
    # via pandas
validators==0.35.0
    # via alifedata-phyloinformatics-convert
wcwidth==0.6.0
    # via prettytable
wrapt==2.1.1
    # via deprecated
yarl==1.22.0
    # via alifedata-phyloinformatics-convert
