LICENSE
README.md
setup.py
enzymetk/__init__.py
enzymetk/annotateEC_CLEAN_step.py
enzymetk/annotateEC_CREEP_step.py
enzymetk/annotateEC_proteinfer_step.py
enzymetk/dock_boltz_step.py
enzymetk/dock_chai_step.py
enzymetk/dock_vina_step.py
enzymetk/embedchem_chemberta_step.py
enzymetk/embedchem_drfp_run.py
enzymetk/embedchem_drfp_step.py
enzymetk/embedchem_rxnfp_run.py
enzymetk/embedchem_rxnfp_step.py
enzymetk/embedchem_selformer_run.py
enzymetk/embedchem_selformer_step.py
enzymetk/embedchem_unimol_step.py
enzymetk/embedprotein_esm3_step.py
enzymetk/embedprotein_esm_step.py
enzymetk/filter_sequence_step.py
enzymetk/filter_structure_step.py
enzymetk/generate_msa_step.py
enzymetk/generate_oligopool_step.py
enzymetk/generate_tree_step.py
enzymetk/inpaint_ligandMPNN_step.py
enzymetk/main.py
enzymetk/metagenomics_porechop_trim_reads_step.py
enzymetk/metagenomics_prokka_annotate_genes.py
enzymetk/pipeline.py
enzymetk/predict_catalyticsite_step.py
enzymetk/save_step.py
enzymetk/sequence_search_blast.py
enzymetk/similarity_foldseek_step.py
enzymetk/similarity_mmseqs_step.py
enzymetk/similarity_reaction_step.py
enzymetk/similarity_substrate_step.py
enzymetk/step.py
enzymetk/structure_search_foldseek.py
enzymetk.egg-info/PKG-INFO
enzymetk.egg-info/SOURCES.txt
enzymetk.egg-info/dependency_links.txt
enzymetk.egg-info/entry_points.txt
enzymetk.egg-info/requires.txt
enzymetk.egg-info/top_level.txt
enzymetk/agent/__init__.py
enzymetk/agent/executor.py
enzymetk/agent/persistence.py
enzymetk/agent/registry.py
enzymetk/agent/schemas.py
enzymetk/agent/workflow.py
enzymetk/agent/tools/__init__.py
enzymetk/agent/tools/alignment_tools.py
enzymetk/agent/tools/annotation_tools.py
enzymetk/agent/tools/base.py
enzymetk/agent/tools/design_tools.py
enzymetk/agent/tools/docking_tools.py
enzymetk/agent/tools/embedding_tools.py
enzymetk/agent/tools/metagenomics_tools.py
enzymetk/agent/tools/prediction_tools.py
enzymetk/agent/tools/search_tools.py
enzymetk/langchain/__init__.py
enzymetk/langchain/agent.py
enzymetk/langchain/toolkit.py
enzymetk/langchain/tools.py
tests/test_agent_tools.py
tests/test_embedprotein_esm_step.py
tests/test_esm2.py
tests/test_foldseek.py