LICENSE
MANIFEST.in
README.md
pyproject.toml
docs/build.md
docs/clean.md
docs/count.md
docs/fastqpp.md
docs/ref.md
docs/summarize.md
docs/updates.md
varseek/__init__.py
varseek/__main__.py
varseek/constants.py
varseek/main.py
varseek/varseek_build.py
varseek/varseek_clean.py
varseek/varseek_count.py
varseek/varseek_denovo.py
varseek/varseek_fastqpp.py
varseek/varseek_ref.py
varseek/varseek_sim.py
varseek/varseek_summarize.py
varseek.egg-info/PKG-INFO
varseek.egg-info/SOURCES.txt
varseek.egg-info/dependency_links.txt
varseek.egg-info/entry_points.txt
varseek.egg-info/requires.txt
varseek.egg-info/top_level.txt
varseek/cpp/bam2vcf.cpp
varseek/utils/__init__.py
varseek/utils/coordinate_conversion.py
varseek/utils/logger_utils.py
varseek/utils/native.py
varseek/utils/seq_utils.py
varseek/utils/type_utils.py
varseek/utils/varseek_build_utils.py
varseek/utils/varseek_clean_utils.py
varseek/utils/varseek_denovo_utils.py
varseek/utils/varseek_fastqpp_utils.py
varseek/utils/varseek_sim_utils.py
varseek/utils/varseek_summarize_utils.py
varseek/utils/visualization_utils.py