LICENSE
MANIFEST.in
README.md
pyproject.toml
pirlygenes/__init__.py
pirlygenes/cli.py
pirlygenes/data_bundle.py
pirlygenes/data_inventory.py
pirlygenes/downloads.py
pirlygenes/gene_families.py
pirlygenes/gene_ids.py
pirlygenes/gene_names.py
pirlygenes/gene_sets_cancer.py
pirlygenes/load_dataset.py
pirlygenes/version.py
pirlygenes.egg-info/PKG-INFO
pirlygenes.egg-info/SOURCES.txt
pirlygenes.egg-info/dependency_links.txt
pirlygenes.egg-info/entry_points.txt
pirlygenes.egg-info/requires.txt
pirlygenes.egg-info/top_level.txt
pirlygenes/builders/__init__.py
pirlygenes/builders/affy_gpl570.py
pirlygenes/builders/geo_matrix.py
pirlygenes/builders/ncbi_gene_info.py
pirlygenes/builders/treehouse.py
pirlygenes/data/ADC-approved.csv
pirlygenes/data/ADC-trials.csv
pirlygenes/data/ADC-withdrawn.csv
pirlygenes/data/CAR-T-approved.csv
pirlygenes/data/TCR-T-approved.csv
pirlygenes/data/TCR-T-trials.csv
pirlygenes/data/artifact-expectations.csv
pirlygenes/data/bispecific-antibodies-approved.csv
pirlygenes/data/cancer-driver-genes.csv
pirlygenes/data/cancer-driver-variants.csv
pirlygenes/data/cancer-expression-source-candidates.csv
pirlygenes/data/cancer-family-panels.csv
pirlygenes/data/cancer-key-genes.csv
pirlygenes/data/cancer-lineage-panels.csv
pirlygenes/data/cancer-reference-expression-samples.csv.gz
pirlygenes/data/cancer-surfaceome.csv
pirlygenes/data/cancer-testis-antigens.csv
pirlygenes/data/cancer-type-genes.csv
pirlygenes/data/cancer-type-registry.csv
pirlygenes/data/culture-stress-genes.csv
pirlygenes/data/degenerate-subtype-pairs.csv
pirlygenes/data/degradation-gene-pairs.csv
pirlygenes/data/disease-state-rules.csv
pirlygenes/data/ensembl-id-aliases.csv
pirlygenes/data/estimate-signatures.csv
pirlygenes/data/expression_sources.yaml
pirlygenes/data/extra-tx-mappings.csv
pirlygenes/data/ffpe-sensitive-markers.csv
pirlygenes/data/fusion-expression-effects.csv
pirlygenes/data/fusion-surrogate-expression.csv
pirlygenes/data/gene-sets.csv
pirlygenes/data/heme-tumor-up-vs-matched-normal.csv
pirlygenes/data/hemoglobin-genes.csv
pirlygenes/data/histone-genes.csv
pirlygenes/data/housekeeping-genes.csv
pirlygenes/data/immune-receptor-segments.csv
pirlygenes/data/lineage-genes.csv
pirlygenes/data/mitochondrial-genes.csv
pirlygenes/data/multispecific-tcell-engager-trials.csv
pirlygenes/data/mutation-expression-effects.csv
pirlygenes/data/narrative-gene-sets.csv
pirlygenes/data/nuclear-retained-lncrnas.csv
pirlygenes/data/numt-pseudogenes.csv
pirlygenes/data/radioligand-targets.csv
pirlygenes/data/rare-cancer-fusion-rules.csv
pirlygenes/data/rare-cancer-rna-surrogates.csv
pirlygenes/data/ribosomal-protein-genes.csv
pirlygenes/data/ribosomal-protein-pseudogenes.csv
pirlygenes/data/rrna-and-pseudogenes.csv
pirlygenes/data/small-noncoding-rnas.csv
pirlygenes/data/surface-proteins.csv
pirlygenes/data/therapy-benefit-toxicity-evidence.csv
pirlygenes/data/therapy-response-signatures.csv
pirlygenes/data/tme-markers.csv
pirlygenes/data/tumor-up-vs-matched-normal.csv
pirlygenes/expression/__init__.py
pirlygenes/expression/accessors.py
pirlygenes/expression/aggregate.py
pirlygenes/expression/normalize.py
pirlygenes/expression/qc.py
pirlygenes/expression/source_cohort_origin.py
pirlygenes/expression/stats.py
tests/test_apl_subtype_key_genes.py
tests/test_build_treehouse.py
tests/test_builders_parsers.py
tests/test_cancer_type_registry.py
tests/test_downloads_and_cli.py
tests/test_expression.py
tests/test_gene_families.py
tests/test_gene_ids.py
tests/test_gene_ids_unit.py
tests/test_load_dataset_and_gene_sets.py
tests/test_readme_imports.py
tests/test_registry_completeness.py
tests/test_sarc_subtype_key_genes.py
tests/test_source_cohort_origin.py
tests/test_stats_and_data.py
tests/test_therapy_benefit_toxicity_evidence.py
tests/test_tranche_c_key_genes.py