LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
snetcr/__init__.py
snetcr/_version.py
snetcr/analysis.py
snetcr/background.py
snetcr/datasets.py
snetcr/distance.py
snetcr/encoding.py
snetcr/export.py
snetcr/indexing.py
snetcr/neighbors.py
snetcr/pgen.py
snetcr/readers.py
snetcr/repertoire.py
snetcr/run_pipeline.py
snetcr/tools.py
snetcr/viz.py
snetcr.egg-info/PKG-INFO
snetcr.egg-info/SOURCES.txt
snetcr.egg-info/dependency_links.txt
snetcr.egg-info/entry_points.txt
snetcr.egg-info/requires.txt
snetcr.egg-info/top_level.txt
snetcr/constants/__init__.py
snetcr/constants/base.py
snetcr/constants/datasets.py
snetcr/constants/distance.py
snetcr/constants/distributions.py
snetcr/constants/hashing.py
snetcr/constants/parsing.py
snetcr/constants/preprocessing.py
snetcr/constants/tools.py
snetcr/constants/data/adaptive_imgt_mapping.csv
snetcr/constants/data/adaptive_v_fam_to_imgt_gene.txt
snetcr/constants/data/alphabeta_db.tsv
snetcr/constants/data/combo_xcr.tsv
snetcr/constants/data/imgt_reference.tsv
snetcr/constants/data/vgene_to_cdr.txt
snetcr/constants/data/vdjdb/LICENSE.txt
snetcr/constants/data/vdjdb/cluster_members.txt
snetcr/constants/data/vdjdb/latest-version.txt
snetcr/constants/data/vdjdb/motif_pwms.txt
snetcr/constants/data/vdjdb/vdjdb.meta.txt
snetcr/constants/data/vdjdb/vdjdb.slim.meta.txt
snetcr/constants/data/vdjdb/vdjdb.slim.txt
snetcr/constants/data/vdjdb/vdjdb.txt
snetcr/constants/data/vdjdb/vdjdb_full.txt
snetcr/constants/data/vdjdb/vdjdb_human.txt
snetcr/constants/data/vdjdb/vdjdb_mouse.txt
snetcr/constants/modules/clustermap/exception.py
snetcr/constants/modules/clustermap/heatmap.py
snetcr/constants/modules/olga/__init__.py
snetcr/constants/modules/olga/compute_pgen.py
snetcr/constants/modules/olga/generate_sequences.py
snetcr/constants/modules/olga/generation_probability.py
snetcr/constants/modules/olga/load_model.py
snetcr/constants/modules/olga/olga_directed.py
snetcr/constants/modules/olga/preprocess_generative_model_and_data.py
snetcr/constants/modules/olga/sequence_generation.py
snetcr/constants/modules/olga/utils.py
snetcr/constants/modules/olga/__pycache__/__init__.cpython-39.pyc
snetcr/constants/modules/olga/__pycache__/generation_probability.cpython-39.pyc
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snetcr/constants/modules/olga/__pycache__/sequence_generation.cpython-39.pyc
snetcr/constants/modules/olga/__pycache__/utils.cpython-39.pyc
snetcr/constants/modules/olga/default_models/human_B_heavy/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_heavy/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_heavy/model_marginals.txt
snetcr/constants/modules/olga/default_models/human_B_heavy/model_params.txt
snetcr/constants/modules/olga/default_models/human_B_kappa/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_kappa/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_kappa/model_marginals.txt
snetcr/constants/modules/olga/default_models/human_B_kappa/model_params.txt
snetcr/constants/modules/olga/default_models/human_B_lambda/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_lambda/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_B_lambda/model_marginals.txt
snetcr/constants/modules/olga/default_models/human_B_lambda/model_params.txt
snetcr/constants/modules/olga/default_models/human_T_alpha/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_T_alpha/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_T_alpha/model_marginals.txt
snetcr/constants/modules/olga/default_models/human_T_alpha/model_params.txt
snetcr/constants/modules/olga/default_models/human_T_beta/.~lock.functional_V_genes.csv#
snetcr/constants/modules/olga/default_models/human_T_beta/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_T_beta/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/human_T_beta/functional_J_genes.csv
snetcr/constants/modules/olga/default_models/human_T_beta/functional_V_genes.csv
snetcr/constants/modules/olga/default_models/human_T_beta/model_marginals.txt
snetcr/constants/modules/olga/default_models/human_T_beta/model_params.txt
snetcr/constants/modules/olga/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/mouse_T_alpha/model_marginals.txt
snetcr/constants/modules/olga/default_models/mouse_T_alpha/model_params.txt
snetcr/constants/modules/olga/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv
snetcr/constants/modules/olga/default_models/mouse_T_beta/model_marginals.txt
snetcr/constants/modules/olga/default_models/mouse_T_beta/model_params.txt
snetcr/constants/modules/tcrdist/__init__.py
snetcr/constants/modules/tcrdist/all_genes.py
snetcr/constants/modules/tcrdist/amino_acids.py
snetcr/constants/modules/tcrdist/basic.py
snetcr/constants/modules/tcrdist/genetic_code.py
snetcr/constants/modules/tcrdist/html_colors.py
snetcr/constants/modules/tcrdist/infer_cdr3_nucleotides.py
snetcr/constants/modules/tcrdist/logo_tools.py
snetcr/constants/modules/tcrdist/make_10x_clones_file.py
snetcr/constants/modules/tcrdist/make_really_tall_trees.py
snetcr/constants/modules/tcrdist/make_tcr_logo.py
snetcr/constants/modules/tcrdist/make_tcr_trees.py
snetcr/constants/modules/tcrdist/score_trees_devel.py
snetcr/constants/modules/tcrdist/tcr_distances.py
snetcr/constants/modules/tcrdist/tcr_distances_blosum.py
snetcr/constants/modules/tcrdist/tcr_sampler.py
snetcr/constants/modules/tcrdist/tcrdist_svg_basic.py
snetcr/constants/modules/tcrdist/translation.py
snetcr/constants/modules/tcrdist/util.py
snetcr/constants/modules/tcrdist/__pycache__/__init__.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/all_genes.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/amino_acids.cpython-39.pyc
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snetcr/constants/modules/tcrdist/__pycache__/genetic_code.cpython-39.pyc
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snetcr/constants/modules/tcrdist/__pycache__/logo_tools.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/make_10x_clones_file.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/make_really_tall_trees.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/make_tcr_logo.cpython-39.pyc
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snetcr/constants/modules/tcrdist/__pycache__/tcr_distances.cpython-39.pyc
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snetcr/constants/modules/tcrdist/__pycache__/translation.cpython-39.pyc
snetcr/constants/modules/tcrdist/__pycache__/util.cpython-39.pyc
snetcr/constants/modules/tcrdist/db/README_thanks.txt
snetcr/constants/modules/tcrdist/db/alphabeta_db.tsv
snetcr/constants/modules/tcrdist/db/combo_db.tsv
snetcr/constants/modules/tcrdist/db/combo_xcr.tsv
snetcr/tests/__init__.py
snetcr/tests/test_analysis.py
snetcr/tests/test_export.py
tcrdist_old/__init__.py
tcrdist_old/all_genes.py
tcrdist_old/amino_acids.py
tcrdist_old/basic.py
tcrdist_old/genetic_code.py
tcrdist_old/html_colors.py
tcrdist_old/infer_cdr3_nucleotides.py
tcrdist_old/logo_tools.py
tcrdist_old/make_10x_clones_file.py
tcrdist_old/make_really_tall_trees.py
tcrdist_old/make_tcr_logo.py
tcrdist_old/make_tcr_trees.py
tcrdist_old/score_trees_devel.py
tcrdist_old/tcr_distances.py
tcrdist_old/tcr_distances_blosum.py
tcrdist_old/tcr_sampler.py
tcrdist_old/tcrdist_svg_basic.py
tcrdist_old/translation.py
tcrdist_old/util.py