LICENSE
README.md
pyproject.toml
mnd/__init__.py
mnd/core.py
mnd/brian/__init__.py
mnd/brian/core.py
modelingneuraldynamics.egg-info/PKG-INFO
modelingneuraldynamics.egg-info/SOURCES.txt
modelingneuraldynamics.egg-info/dependency_links.txt
modelingneuraldynamics.egg-info/requires.txt
modelingneuraldynamics.egg-info/top_level.txt
tests/test_ch01_brian_hh_voltage_trace.py
tests/test_ch01_hh_voltage_trace.py
tests/test_ch03_hh_gating_variables.py
tests/test_ch04_brian_hh_limit_cycle.py
tests/test_ch04_brian_hh_refractoriness.py
tests/test_ch04_brian_hh_solution.py
tests/test_ch04_hh_limit_cycle.py
tests/test_ch04_hh_refractoriness.py
tests/test_ch04_hh_solution.py
tests/test_ch05_brian_erisir_voltage_trace.py
tests/test_ch05_brian_erisir_voltage_trace_2.py
tests/test_ch05_brian_rtm_voltage_trace.py
tests/test_ch05_brian_wb_voltage_trace.py
tests/test_ch05_erisir_voltage_trace.py
tests/test_ch05_erisir_voltage_trace_2.py
tests/test_ch05_rtm_gating_variables.py
tests/test_ch05_rtm_voltage_trace.py
tests/test_ch05_wb_voltage_trace.py
tests/test_ch05_wb_voltage_trace_1996.py
tests/test_ch07_brian_lif_neuron_with_hh.py
tests/test_ch07_brian_lif_voltage_trace.py
tests/test_ch07_brian_lif_voltage_trace_2.py
tests/test_ch07_brian_subthr_for_hh.py
tests/test_ch07_brian_tau_m_for_hh.py
tests/test_ch07_hh_subthreshold.py
tests/test_ch07_lif_voltage_trace.py
tests/test_ch07_lif_voltage_trace_2.py
tests/test_ch08_brian_qif_voltage_trace.py
tests/test_ch08_brian_theta_firing.py
tests/test_ch08_qif_infinite_threshold.py
tests/test_ch08_qif_voltage_trace.py
tests/test_ch08_theta_firing.py
tests/test_ch09_adaptation_map.py
tests/test_ch09_brian_lif_adapt.py
tests/test_ch09_brian_rtm_ahp.py
tests/test_ch09_brian_rtm_ahp_resting.py
tests/test_ch09_brian_rtm_m.py
tests/test_ch09_brian_rtm_m_resting.py
tests/test_ch09_brian_v_v_tilde.py
tests/test_ch09_calcium_rise.py
tests/test_ch09_lif_adapt.py
tests/test_ch09_m_current.py
tests/test_ch09_notebook_smoke.py
tests/test_ch09_rtm_ahp.py
tests/test_ch09_rtm_m.py
tests/test_ch09_v_v_tilde.py
tests/test_ch10_fn.py
tests/test_ch10_hh_cycle_speed.py
tests/test_ch10_hh_h_plus_n.py
tests/test_ch10_hh_nullclines_plus_solution.py
tests/test_ch10_reduced_hh.py
tests/test_ch11_saddle_node_bifurcation.py
tests/test_ch12_rtm_2d_fp.py
tests/test_ch12_rtm_2d_invariant_cycle.py
tests/test_ch13_hopf_sub.py
tests/test_ch13_notebook_smoke.py
tests/test_ch14_erisir_2d_fp.py
tests/test_ch14_erisir_reduced.py
tests/test_ch14_hh_reduced_count_fp.py
tests/test_ch14_hh_reduced_cycle_distance.py
tests/test_ch14_hh_reduced_fixed_points.py
tests/test_ch14_hh_reduced_fp_evs.py
tests/test_ch14_hh_reduced_repelling_cycle.py
tests/test_ch15_canard.py
tests/test_ch15_canard_2.py
tests/test_ch15_fitzhugh_nagumo_macro.py
tests/test_ch15_fitzhugh_nagumo_micro.py
tests/test_ch15_hh_reduced_bif_diag.py
tests/test_ch15_mmos.py
tests/test_ch16_inapik_fixed_points.py
tests/test_ch16_inapik_phase_plane.py
tests/test_ch16_self_exciting_theta_neuron.py
tests/test_ch16_self_exciting_theta_smooth.py
tests/test_ch16_setn_phase_plane.py
tests/test_ch17_erisir_f_i_curve.py
tests/test_ch17_hh_reduced_f_i_curve.py
tests/test_ch17_inapik_f_i_curve.py
tests/test_ch17_inapik_saddle_cycle_distance.py
tests/test_ch17_legacy_f_i_curves.py
tests/test_ch17_lif_f_i_curve.py
tests/test_ch17_rtm_with_m_current_f_i.py
tests/test_ch17_setn_f_i.py
tests/test_ch17_theta_f_i_curve.py
tests/test_ch17_wb_f_i_curve.py
tests/test_ch17_wb_f_i_curve_at_onset.py
tests/test_ch18_erisir_bistable.py
tests/test_ch18_erisir_bistable_gates.py
tests/test_ch18_erisir_bistable_limited_h.py
tests/test_ch18_h_current.py
tests/test_ch18_hh_bistable.py
tests/test_ch18_hh_bistable_gates.py
tests/test_ch18_hh_bistable_limited_n.py
tests/test_ch18_plot_modified_tau_r.py
tests/test_ch18_rtm_f_i_curve_with_i_h.py
tests/test_ch18_rtm_voltage_trace_with_i_h.py
tests/test_ch18_rtm_with_i_h_bistable.py
tests/test_ch18_rtm_with_i_h_bistable_gates.py
tests/test_ch18_rtm_with_i_h_limited_r.py
tests/test_ch18_rtm_with_i_m_bistable.py
tests/test_ch18_rtm_with_i_m_bistable_gates.py
tests/test_ch18_rtm_with_i_m_limited_w.py
tests/test_ch19_brian_ellipses.py
tests/test_ch19_brian_erisir_plus_slow_i_k.py
tests/test_ch19_brian_inapik_plus_slow_i_k.py
tests/test_ch19_brian_inapik_plus_strong_slow_i_k.py
tests/test_ch19_brian_inapik_plus_weak_slow_i_k.py
tests/test_ch19_brian_square_waves.py
tests/test_ch19_ellipses.py
tests/test_ch19_erisir_plus_slow_i_k.py
tests/test_ch19_erisir_show_slow_i_k.py
tests/test_ch19_inapik_plus_slow_i_k.py
tests/test_ch19_inapik_plus_slow_i_k_3d.py
tests/test_ch19_inapik_plus_strong_slow_i_k.py
tests/test_ch19_inapik_plus_weak_slow_i_k.py
tests/test_ch19_inapik_show_slow_i_k.py
tests/test_ch19_square_waves.py
tests/test_ch20_b_jahr_stevens.py
tests/test_ch20_brian_b_jahr_stevens.py
tests/test_ch20_brian_rtm_plot_q.py
tests/test_ch20_brian_rtm_plot_s.py
tests/test_ch20_brian_rtm_plot_s_prescribe_tau_peak.py
tests/test_ch20_brian_rtm_plot_s_two_variables.py
tests/test_ch20_brian_rtm_with_autapse_f_i_curve.py
tests/test_ch20_brian_s_buildup.py
tests/test_ch20_brian_s_slow_buildup.py
tests/test_ch20_rtm_plot_q.py
tests/test_ch20_rtm_plot_s.py
tests/test_ch20_rtm_plot_s_prescribe_tau_peak.py
tests/test_ch20_rtm_plot_s_two_variables.py
tests/test_ch20_rtm_with_autapse_f_i_curve.py
tests/test_ch20_s_buildup.py
tests/test_ch20_s_slow_buildup.py
tests/test_ch21_brian_lif_network_with_gj.py
tests/test_ch21_brian_reset_threshold.py
tests/test_ch21_brian_wb_network_with_gj.py
tests/test_ch21_brian_wb_network_with_gj_subthreshold.py
tests/test_ch21_lif_network_with_gj.py
tests/test_ch21_reset_threshold.py
tests/test_ch21_wb_network_with_gj.py
tests/test_ch21_wb_network_with_gj_subthreshold.py
tests/test_ch22_wilson_cowan_e_and_i.py
tests/test_ch22_wilson_cowan_lowering_w_ee.py
tests/test_ch22_wilson_cowan_phase_plane.py
tests/test_ch22_wilson_cowan_rastergram.py
tests/test_ch23_brian_wb_neuron_entrained.py
tests/test_ch23_brian_wb_neuron_irregular.py
tests/test_ch23_brian_wb_neuron_n_to_one.py
tests/test_ch23_lif_entrainment.py
tests/test_ch23_plot_f_entrainment.py
tests/test_ch23_plot_f_entrainment_2.py
tests/test_ch23_wb_entrainment_intervals.py
tests/test_ch23_wb_neuron_entrained.py
tests/test_ch23_wb_neuron_irregular.py
tests/test_ch23_wb_neuron_n_to_one.py
tests/test_ch24_brian_rtm_e_to_e_heterogeneous.py
tests/test_ch24_brian_rtm_e_to_e_network_1.py
tests/test_ch24_brian_rtm_e_to_e_network_2.py
tests/test_ch24_brian_rtm_two_cell_network.py
tests/test_ch24_rtm_e_to_e_heterogeneous.py
tests/test_ch24_rtm_e_to_e_network_1.py
tests/test_ch24_rtm_e_to_e_network_2.py
tests/test_ch24_rtm_splay.py
tests/test_ch24_rtm_sync.py
tests/test_ch24_rtm_two_cell_network.py
tests/test_ch25_misc_prc.py
tests/test_ch25_phase_shift.py
tests/test_ch25_rtm_interaction_function.py
tests/test_ch25_rtm_prc.py
tests/test_ch25_rtm_prc_short.py
tests/test_ch25_rtm_prc_short_and_weak.py
tests/test_ch25_rtm_prc_three_weak_ones.py
tests/test_ch25_rtm_prc_weak.py
tests/test_ch25_theta_f.py
tests/test_ch25_theta_f_tilde.py
tests/test_ch25_theta_prc.py
tests/test_ch25_theta_prc_short_weak.py
tests/test_ch25_wb_prc_inhibitory_pulse.py
tests/test_ch26_abstract_pulse_coupling.py
tests/test_ch26_f_tilde.py
tests/test_ch26_rtm_plot_g.py
tests/test_ch26_two_pulse_coupled_osc.py
tests/test_ch27_three_delayed_pulse_coupled_osc.py
tests/test_ch27_two_delayed_pulse_coupled_osc.py
tests/test_ch27_two_theta_neurons.py
tests/test_ch28_plot_d_two_fixed_points.py
tests/test_ch28_weakly_coupled_1.py
tests/test_ch28_weakly_coupled_2.py
tests/test_ch28_weakly_coupled_heterogeneous_1.py
tests/test_ch29_illustrate_p0_and_p1.py
tests/test_ch29_lif_condition_numbers.py
tests/test_ch29_lif_p_and_s.py
tests/test_ch29_lif_with_inhibitory_pulse.py
tests/test_ch29_river.py
tests/test_ch29_rtm_condition_numbers.py
tests/test_ch29_rtm_with_inhibitory_pulse.py
tests/test_ch30_ping_5.py
tests/test_ch30_ping_6_to_9.py
tests/test_ch31_1_cell_ing_condition_numbers.py
tests/test_ch31_abstract_pulse_coupling_inh.py
tests/test_ch31_abstract_pulse_coupling_inh_2.py
tests/test_ch31_brian_1_cell_ing.py
tests/test_ch31_brian_1_cell_ing_condition_numbers.py
tests/test_ch31_brian_ing_configuration.py
tests/test_ch31_brian_ing_entrainment.py
tests/test_ch31_brian_ing_networks.py
tests/test_ch31_brian_shared.py
tests/test_ch31_ing_2_to_10.py
tests/test_ch31_ing_entraining_e_cells.py
tests/test_ch32_m_current_ping_poisson_ping.py
tests/test_ch33_m_current_ping_and_pinb.py
tests/test_ch34_brian_olm_with_h_and_a_currents.py
tests/test_ch34_brian_olm_with_h_current.py
tests/test_ch34_brian_ping_with_theta_drive.py
tests/test_ch34_brian_ping_with_theta_inhibition.py
tests/test_ch34_brian_pre_olm_voltage_trace.py
tests/test_ch34_pre_olm_voltage_trace.py
tests/test_ch35_periodic_inhibition.py
tests/test_ch36_f_i_curves_pulsed_excitation.py
tests/test_ch37_thresholding_in_ping.py
tests/test_ch38_gamma_coherence.py
tests/test_ch39_ch40_remaining.py
tests/test_mnd_core.py
tests/test_notebook_definition_loader.py
tests/test_python_chapter_docs.py