Metadata-Version: 2.3
Name: tif-to-zarr
Version: 0.6.1
Summary: 
License: BSD 3-Clause License
Author: yurii_zubov
Requires-Python: ==3.11.11
Classifier: License :: Other/Proprietary License
Classifier: Programming Language :: Python :: 3
Requires-Dist: asciitree (==0.3.3)
Requires-Dist: black (==24.10.0)
Requires-Dist: click (==8.1.7)
Requires-Dist: dask-jobqueue (==0.8.2)
Requires-Dist: imagecodecs (==2024.1.1)
Requires-Dist: pyyaml (==6.0.1)
Description-Content-Type: text/markdown

This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.
#### How to run
1. open command line terminal
2. install tif_to_zarr
    ``pip install tif_to_zarr``
5. run script using cli:
    ``tif_to_zarr --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr``
6. to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this:
``tif_to_zarr --src=path_to_source_tif(3d or stack)  --dest=path_to_output_zarr --num_workers=20 --cluster=local(or lsf) --zarr_chunks 13 128 128 --axes x z y --scale 4.0 5.0 6.0 --translation 1.0 2.0 3.0 --units nanometer nanometer nanometer``
7. To get the list of options, you may run this:
``tif_to_zarr --help``

