# folders
outputs/
figures/
logs/
nextflow/
work/
examples/outputs/
.ipynb_checkpoints/
.vscode/
docs/build/
_archive/

# ignore compiled python files
*.pyc
__pycache__/
.DS_Store

# files
inputs/BIND15.csv
inputs/BIND16.csv
inputs/ma2.csv
inputs/ma3.csv
inputs/NB1.csv
inputs/NB2.csv
inputs/NB3.csv
inputs/NB4.csv
inputs/NB5.csv
inputs/NB8.csv
inputs/NB12.csv
inputs/NB13.csv
inputs/pa.csv
inputs/pb.csv

examples/*.svg
docs/source/tutorials/case_studies/*.csv
docs/source/tutorials/case_studies/notebook_results/
docs/source/tutorials/case_studies/summary_tables/*