.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
LNB_MDT/__init__.py
LNB_MDT/config.ini
LNB_MDT/icon.ico
LNB_MDT/main.py
LNB_MDT/main.ui
LNB_MDT/remote_ctl.tcl
LNB_MDT/resources.qrc
LNB_MDT/analysis/__init__.py
LNB_MDT/analysis/analysis_base.py
LNB_MDT/analysis/anisotropy.py
LNB_MDT/analysis/area.py
LNB_MDT/analysis/cluster.py
LNB_MDT/analysis/density.py
LNB_MDT/analysis/gyration.py
LNB_MDT/analysis/height.py
LNB_MDT/analysis/parameter_utils.py
LNB_MDT/analysis/sz.py
LNB_MDT/cases_lnb/lnb.gro
LNB_MDT/cases_lnb/lnb.xtc
LNB_MDT/figure/__init__.py
LNB_MDT/figure/density_figure.py
LNB_MDT/figure/figure.py
LNB_MDT/figure/make_figure.py
LNB_MDT/images/_images/LNB.png
LNB_MDT/images/_images/_PyDracula.png
LNB_MDT/images/_images/_PyDracula_horizontal.png
LNB_MDT/images/icons/cil-3d.png
LNB_MDT/images/icons/cil-4k.png
LNB_MDT/images/icons/cil-account-logout.png
LNB_MDT/images/icons/cil-action-redo.png
LNB_MDT/images/icons/cil-action-undo.png
LNB_MDT/images/icons/cil-airplane-mode-off.png
LNB_MDT/images/icons/cil-airplane-mode.png
LNB_MDT/images/icons/cil-alarm.png
LNB_MDT/images/icons/cil-align-center.png
LNB_MDT/images/icons/cil-align-left.png
LNB_MDT/images/icons/cil-align-right.png
LNB_MDT/images/icons/cil-arrow-bottom-2.png
LNB_MDT/images/icons/cil-arrow-bottom.png
LNB_MDT/images/icons/cil-arrow-circle-bottom.png
LNB_MDT/images/icons/cil-arrow-circle-left.png
LNB_MDT/images/icons/cil-arrow-circle-right.png
LNB_MDT/images/icons/cil-arrow-circle-top.png
LNB_MDT/images/icons/cil-arrow-left.png
LNB_MDT/images/icons/cil-arrow-right.png
LNB_MDT/images/icons/cil-arrow-top.png
LNB_MDT/images/icons/cil-at.png
LNB_MDT/images/icons/cil-av-timer.png
LNB_MDT/images/icons/cil-ban.png
LNB_MDT/images/icons/cil-battery-0.png
LNB_MDT/images/icons/cil-battery-3.png
LNB_MDT/images/icons/cil-battery-5.png
LNB_MDT/images/icons/cil-battery-alert.png
LNB_MDT/images/icons/cil-battery-slash.png
LNB_MDT/images/icons/cil-bell.png
LNB_MDT/images/icons/cil-bluetooth.png
LNB_MDT/images/icons/cil-briefcase.png
LNB_MDT/images/icons/cil-browser.png
LNB_MDT/images/icons/cil-calendar-check.png
LNB_MDT/images/icons/cil-camera-roll.png
LNB_MDT/images/icons/cil-camera.png
LNB_MDT/images/icons/cil-caret-bottom.png
LNB_MDT/images/icons/cil-caret-left.png
LNB_MDT/images/icons/cil-caret-right.png
LNB_MDT/images/icons/cil-caret-top.png
LNB_MDT/images/icons/cil-cart.png
LNB_MDT/images/icons/cil-cast.png
LNB_MDT/images/icons/cil-chart-line.png
LNB_MDT/images/icons/cil-chart-pie.png
LNB_MDT/images/icons/cil-chart.png
LNB_MDT/images/icons/cil-chat-bubble.png
LNB_MDT/images/icons/cil-check-alt.png
LNB_MDT/images/icons/cil-check-circle.png
LNB_MDT/images/icons/cil-check.png
LNB_MDT/images/icons/cil-chevron-bottom.png
LNB_MDT/images/icons/cil-chevron-circle-down-alt.png
LNB_MDT/images/icons/cil-chevron-circle-left-alt.png
LNB_MDT/images/icons/cil-chevron-circle-right-alt.png
LNB_MDT/images/icons/cil-chevron-circle-up-alt.png
LNB_MDT/images/icons/cil-chevron-double-down.png
LNB_MDT/images/icons/cil-chevron-double-left.png
LNB_MDT/images/icons/cil-chevron-double-right.png
LNB_MDT/images/icons/cil-chevron-double-up-alt.png
LNB_MDT/images/icons/cil-chevron-double-up.png
LNB_MDT/images/icons/cil-chevron-left.png
LNB_MDT/images/icons/cil-chevron-right.png
LNB_MDT/images/icons/cil-chevron-top.png
LNB_MDT/images/icons/cil-circle.png
LNB_MDT/images/icons/cil-clipboard.png
LNB_MDT/images/icons/cil-clock.png
LNB_MDT/images/icons/cil-clone.png
LNB_MDT/images/icons/cil-closed-captioning.png
LNB_MDT/images/icons/cil-cloud-download.png
LNB_MDT/images/icons/cil-cloud-upload.png
LNB_MDT/images/icons/cil-cloudy.png
LNB_MDT/images/icons/cil-code.png
LNB_MDT/images/icons/cil-coffee.png
LNB_MDT/images/icons/cil-comment-bubble.png
LNB_MDT/images/icons/cil-comment-square.png
LNB_MDT/images/icons/cil-credit-card.png
LNB_MDT/images/icons/cil-cursor-move.png
LNB_MDT/images/icons/cil-cursor.png
LNB_MDT/images/icons/cil-cut.png
LNB_MDT/images/icons/cil-data-transfer-down.png
LNB_MDT/images/icons/cil-data-transfer-up.png
LNB_MDT/images/icons/cil-deaf.png
LNB_MDT/images/icons/cil-description.png
LNB_MDT/images/icons/cil-devices.png
LNB_MDT/images/icons/cil-dialpad.png
LNB_MDT/images/icons/cil-dog.png
LNB_MDT/images/icons/cil-door.png
LNB_MDT/images/icons/cil-double-quote-sans-left.png
LNB_MDT/images/icons/cil-double-quote-sans-right.png
LNB_MDT/images/icons/cil-drop.png
LNB_MDT/images/icons/cil-envelope-closed.png
LNB_MDT/images/icons/cil-envelope-letter.png
LNB_MDT/images/icons/cil-envelope-open.png
LNB_MDT/images/icons/cil-equalizer.png
LNB_MDT/images/icons/cil-ethernet.png
LNB_MDT/images/icons/cil-exit-to-app.png
LNB_MDT/images/icons/cil-expand-down.png
LNB_MDT/images/icons/cil-expand-left.png
LNB_MDT/images/icons/cil-expand-right.png
LNB_MDT/images/icons/cil-expand-up.png
LNB_MDT/images/icons/cil-exposure.png
LNB_MDT/images/icons/cil-external-link.png
LNB_MDT/images/icons/cil-face-dead.png
LNB_MDT/images/icons/cil-featured-playlist.png
LNB_MDT/images/icons/cil-file.png
LNB_MDT/images/icons/cil-find-in-page.png
LNB_MDT/images/icons/cil-fingerprint.png
LNB_MDT/images/icons/cil-fire.png
LNB_MDT/images/icons/cil-flip-to-back.png
LNB_MDT/images/icons/cil-folder-open.png
LNB_MDT/images/icons/cil-folder.png
LNB_MDT/images/icons/cil-frown.png
LNB_MDT/images/icons/cil-gamepad.png
LNB_MDT/images/icons/cil-hand-point-down.png
LNB_MDT/images/icons/cil-hand-point-left.png
LNB_MDT/images/icons/cil-hand-point-right.png
LNB_MDT/images/icons/cil-hand-point-up.png
LNB_MDT/images/icons/cil-hd.png
LNB_MDT/images/icons/cil-hdr.png
LNB_MDT/images/icons/cil-headphones.png
LNB_MDT/images/icons/cil-heart.png
LNB_MDT/images/icons/cil-highligt.png
LNB_MDT/images/icons/cil-history.png
LNB_MDT/images/icons/cil-home.png
LNB_MDT/images/icons/cil-house.png
LNB_MDT/images/icons/cil-image-plus.png
LNB_MDT/images/icons/cil-image1.png
LNB_MDT/images/icons/cil-infinity.png
LNB_MDT/images/icons/cil-input-power.png
LNB_MDT/images/icons/cil-input.png
LNB_MDT/images/icons/cil-justify-center.png
LNB_MDT/images/icons/cil-justify-left.png
LNB_MDT/images/icons/cil-justify-right.png
LNB_MDT/images/icons/cil-keyboard.png
LNB_MDT/images/icons/cil-laptop.png
LNB_MDT/images/icons/cil-layers.png
LNB_MDT/images/icons/cil-level-down.png
LNB_MDT/images/icons/cil-level-up.png
LNB_MDT/images/icons/cil-library-add.png
LNB_MDT/images/icons/cil-library.png
LNB_MDT/images/icons/cil-lightbulb.png
LNB_MDT/images/icons/cil-link-alt.png
LNB_MDT/images/icons/cil-link-broken.png
LNB_MDT/images/icons/cil-link.png
LNB_MDT/images/icons/cil-location-pin.png
LNB_MDT/images/icons/cil-lock-locked.png
LNB_MDT/images/icons/cil-lock-unlocked.png
LNB_MDT/images/icons/cil-loop-1.png
LNB_MDT/images/icons/cil-loop-circular.png
LNB_MDT/images/icons/cil-loop.png
LNB_MDT/images/icons/cil-low-vision.png
LNB_MDT/images/icons/cil-magnifying-glass.png
LNB_MDT/images/icons/cil-map.png
LNB_MDT/images/icons/cil-media-eject.png
LNB_MDT/images/icons/cil-media-pause.png
LNB_MDT/images/icons/cil-media-play.png
LNB_MDT/images/icons/cil-media-skip-backward.png
LNB_MDT/images/icons/cil-media-skip-forward.png
LNB_MDT/images/icons/cil-media-step-backward.png
LNB_MDT/images/icons/cil-media-step-forward.png
LNB_MDT/images/icons/cil-media-stop.png
LNB_MDT/images/icons/cil-medical-cross.png
LNB_MDT/images/icons/cil-meh.png
LNB_MDT/images/icons/cil-menu.png
LNB_MDT/images/icons/cil-microphone.png
LNB_MDT/images/icons/cil-minus.png
LNB_MDT/images/icons/cil-mobile-landscape.png
LNB_MDT/images/icons/cil-mobile.png
LNB_MDT/images/icons/cil-mood-bad.png
LNB_MDT/images/icons/cil-mood-good.png
LNB_MDT/images/icons/cil-mood-very-bad.png
LNB_MDT/images/icons/cil-mood-very-good.png
LNB_MDT/images/icons/cil-moon.png
LNB_MDT/images/icons/cil-mouse.png
LNB_MDT/images/icons/cil-move.png
LNB_MDT/images/icons/cil-movie.png
LNB_MDT/images/icons/cil-mug-tea.png
LNB_MDT/images/icons/cil-mug.png
LNB_MDT/images/icons/cil-notes.png
LNB_MDT/images/icons/cil-options-horizontal.png
LNB_MDT/images/icons/cil-options.png
LNB_MDT/images/icons/cil-paint-bucket.png
LNB_MDT/images/icons/cil-paper-plane.png
LNB_MDT/images/icons/cil-paperclip.png
LNB_MDT/images/icons/cil-paragraph.png
LNB_MDT/images/icons/cil-pen-alt.png
LNB_MDT/images/icons/cil-pencil.png
LNB_MDT/images/icons/cil-people.png
LNB_MDT/images/icons/cil-phone.png
LNB_MDT/images/icons/cil-pin.png
LNB_MDT/images/icons/cil-plus.png
LNB_MDT/images/icons/cil-power-standby.png
LNB_MDT/images/icons/cil-print.png
LNB_MDT/images/icons/cil-rectangle.png
LNB_MDT/images/icons/cil-reload.png
LNB_MDT/images/icons/cil-remove.png
LNB_MDT/images/icons/cil-rss.png
LNB_MDT/images/icons/cil-satelite.png
LNB_MDT/images/icons/cil-save.png
LNB_MDT/images/icons/cil-screen-desktop.png
LNB_MDT/images/icons/cil-screen-smartphone.png
LNB_MDT/images/icons/cil-settings.png
LNB_MDT/images/icons/cil-share-boxed.png
LNB_MDT/images/icons/cil-share.png
LNB_MDT/images/icons/cil-signal-cellular-0.png
LNB_MDT/images/icons/cil-signal-cellular-3.png
LNB_MDT/images/icons/cil-size-grip.png
LNB_MDT/images/icons/cil-smile.png
LNB_MDT/images/icons/cil-speaker.png
LNB_MDT/images/icons/cil-speech.png
LNB_MDT/images/icons/cil-speedometer.png
LNB_MDT/images/icons/cil-star.png
LNB_MDT/images/icons/cil-tags.png
LNB_MDT/images/icons/cil-task.png
LNB_MDT/images/icons/cil-terminal.png
LNB_MDT/images/icons/cil-text-size.png
LNB_MDT/images/icons/cil-text-square.png
LNB_MDT/images/icons/cil-text.png
LNB_MDT/images/icons/cil-thumb-down.png
LNB_MDT/images/icons/cil-thumb-up.png
LNB_MDT/images/icons/cil-transfer.png
LNB_MDT/images/icons/cil-triangle.png
LNB_MDT/images/icons/cil-truck.png
LNB_MDT/images/icons/cil-user-female.png
LNB_MDT/images/icons/cil-user-follow.png
LNB_MDT/images/icons/cil-user-unfollow.png
LNB_MDT/images/icons/cil-user.png
LNB_MDT/images/icons/cil-vertical-align-bottom.png
LNB_MDT/images/icons/cil-view-column.png
LNB_MDT/images/icons/cil-view-module.png
LNB_MDT/images/icons/cil-view-quilt.png
LNB_MDT/images/icons/cil-view-stream.png
LNB_MDT/images/icons/cil-voice-over-record.png
LNB_MDT/images/icons/cil-volume-high.png
LNB_MDT/images/icons/cil-volume-low.png
LNB_MDT/images/icons/cil-volume-off.png
LNB_MDT/images/icons/cil-wallet.png
LNB_MDT/images/icons/cil-watch.png
LNB_MDT/images/icons/cil-wifi-signal-0.png
LNB_MDT/images/icons/cil-wifi-signal-1.png
LNB_MDT/images/icons/cil-wifi-signal-2.png
LNB_MDT/images/icons/cil-wifi-signal-4.png
LNB_MDT/images/icons/cil-wifi-signal-off.png
LNB_MDT/images/icons/cil-window-maximize.png
LNB_MDT/images/icons/cil-window-minimize.png
LNB_MDT/images/icons/cil-window-restore.png
LNB_MDT/images/icons/cil-wrap-text.png
LNB_MDT/images/icons/cil-x-circle.png
LNB_MDT/images/icons/cil-x.png
LNB_MDT/images/icons/cil-zoom-in.png
LNB_MDT/images/icons/cil-zoom-out.png
LNB_MDT/images/icons/houtui.png
LNB_MDT/images/icons/houtui_black.png
LNB_MDT/images/icons/icon_close.png
LNB_MDT/images/icons/icon_maximize.png
LNB_MDT/images/icons/icon_menu.png
LNB_MDT/images/icons/icon_minimize.png
LNB_MDT/images/icons/icon_restore.png
LNB_MDT/images/icons/icon_settings.png
LNB_MDT/images/icons/shuaxin.png
LNB_MDT/images/icons/shuaxin_black.png
LNB_MDT/modules/Analysis_Figure.py
LNB_MDT/modules/Analysis_Figure.ui
LNB_MDT/modules/Fuctions_Analysis.py
LNB_MDT/modules/Fuctions_Figure.py
LNB_MDT/modules/Fuctions_Generation.py
LNB_MDT/modules/Fuctions_data_process.py
LNB_MDT/modules/Tools.py
LNB_MDT/modules/__init__.py
LNB_MDT/modules/app_functions.py
LNB_MDT/modules/app_settings.py
LNB_MDT/modules/button_binding_helper.py
LNB_MDT/modules/file_detection.py
LNB_MDT/modules/resources_rc.py
LNB_MDT/modules/theme_manager.py
LNB_MDT/modules/ui_functions.py
LNB_MDT/modules/ui_main.py
LNB_MDT/modules/vmd_control.py
LNB_MDT/preparation/__init__.py
LNB_MDT/preparation/lipidsInfo_martini2.py
LNB_MDT/preparation/lipidsInfo_martini3.py
LNB_MDT/preparation/lnb_gener_martini2.py
LNB_MDT/preparation/lnb_gener_martini3.py
LNB_MDT/preparation/lnb_generate_with_folder.py
LNB_MDT/preparation/ndx_generator.py
LNB_MDT/preparation/files/equilibration_1.mdp
LNB_MDT/preparation/files/equilibration_2.mdp
LNB_MDT/preparation/files/equilibration_3.mdp
LNB_MDT/preparation/files/equilibration_4.mdp
LNB_MDT/preparation/files/equilibration_5.mdp
LNB_MDT/preparation/files/martini_v3.0.0.itp
LNB_MDT/preparation/files/martini_v3.0.0_ffbonded.itp
LNB_MDT/preparation/files/martini_v3.0.0_gas.itp
LNB_MDT/preparation/files/martini_v3.0.0_ions.itp
LNB_MDT/preparation/files/martini_v3.0.0_phospholipids.itp
LNB_MDT/preparation/files/martini_v3.0.0_solvents.itp
LNB_MDT/preparation/files/minimization_1.mdp
LNB_MDT/preparation/files/minimization_2.mdp
LNB_MDT/preparation/files/pipeline.sh
LNB_MDT/preparation/files/production.mdp
LNB_MDT/themes/py_dracula_dark.qss
LNB_MDT/themes/py_dracula_light.qss
LNB_MDT/widgets/__init__.py
LNB_MDT/widgets/main.ui
LNB_MDT/widgets/custom_grips/__init__.py
LNB_MDT/widgets/custom_grips/custom_grips.py
benchmark/__init__.py
benchmark/analysis_base.py
benchmark/area_origin.py
benchmark/area_test_angle_and_make_figure.py
benchmark/cluster_distribution.py
benchmark/curvature.py
benchmark/curvature_origin.py
benchmark/gas_lipid_contact.py
benchmark/height_origin.py
benchmark/n_cluster.py
benchmark/pca.py
benchmark/rad_lx.py
benchmark/rad_me.py
benchmark/test_extract_time.py
docs/MULTI_RADIUS_DENSITY_ANALYSIS.md
docs/Makefile
docs/RST_UPDATES_SUMMARY.md
docs/SIMPLIFIED_PARAMETER_INPUT.md
docs/build_docs.sh
docs/make.bat
docs/preview.sh
docs/source/analysis_modules.rst
docs/source/conf.py
docs/source/figure_details.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/preparation.rst
docs/source/quickstart.rst
docs/source/_static/custom.css
docs/source/_static/custom.js
lnb_mdt.egg-info/PKG-INFO
lnb_mdt.egg-info/SOURCES.txt
lnb_mdt.egg-info/dependency_links.txt
lnb_mdt.egg-info/entry_points.txt
lnb_mdt.egg-info/requires.txt
lnb_mdt.egg-info/top_level.txt