LICENSE
README.md
pyproject.toml
torchref/__init__.py
torchref/_bootstrap.py
torchref/config.py
torchref.egg-info/PKG-INFO
torchref.egg-info/SOURCES.txt
torchref.egg-info/dependency_links.txt
torchref.egg-info/entry_points.txt
torchref.egg-info/requires.txt
torchref.egg-info/top_level.txt
torchref/alignment/__init__.py
torchref/alignment/ball_transform.py
torchref/alignment/clashscore.py
torchref/alignment/distributions.py
torchref/alignment/jax_subpixel_peaks.py
torchref/alignment/pipeline.py
torchref/alignment/rigid_body.py
torchref/alignment/sampling.py
torchref/alignment/transform.py
torchref/alignment/translation.py
torchref/base/CCTBX_related.py
torchref/base/__init__.py
torchref/base/french_wilson.py
torchref/base/get_scattering_factor_torch.py
torchref/base/math_numpy.py
torchref/base/math_torch.py
torchref/base/alignment/__init__.py
torchref/base/alignment/normalization.py
torchref/base/alignment/rotation.py
torchref/base/alignment/scoring.py
torchref/base/alignment/superposition.py
torchref/base/coordinates/__init__.py
torchref/base/coordinates/periodic_boundary.py
torchref/base/coordinates/transforms_numpy.py
torchref/base/coordinates/transforms_torch.py
torchref/base/electron_density/__init__.py
torchref/base/electron_density/map_building.py
torchref/base/electron_density/solvent_mask.py
torchref/base/electron_density/voxel_utils.py
torchref/base/fourier/__init__.py
torchref/base/fourier/fft.py
torchref/base/fourier/grid.py
torchref/base/kernels/__init__.py
torchref/base/kernels/jit_kernel_vectorized_add_to_map.py
torchref/base/kernels/optimized_ops.py
torchref/base/metrics/__init__.py
torchref/base/metrics/loss.py
torchref/base/metrics/rfactor.py
torchref/base/reciprocal/__init__.py
torchref/base/reciprocal/basis.py
torchref/base/reciprocal/grid_operations.py
torchref/base/reciprocal/hkl.py
torchref/base/reciprocal/interpolation.py
torchref/base/reciprocal/symmetry.py
torchref/base/scattering/__init__.py
torchref/base/scattering/itc92.py
torchref/base/structure_factors/__init__.py
torchref/base/structure_factors/anisotropic.py
torchref/base/structure_factors/corrections.py
torchref/base/structure_factors/isotropic.py
torchref/cli/__init__.py
torchref/cli/refine.py
torchref/cli/refine_everything.py
torchref/cli/refine_everything_hyperparameters.py
torchref/cli/refine_everything_policy.py
torchref/cli/refine_everything_random_weights.py
torchref/cli/refine_everything_static.py
torchref/cli/refine_screened.py
torchref/io/__init__.py
torchref/io/cif.py
torchref/io/cif_readers.py
torchref/io/data_router.py
torchref/io/mtz.py
torchref/io/pdb.py
torchref/io/datasets/__init__.py
torchref/io/datasets/base.py
torchref/io/datasets/collection.py
torchref/io/datasets/reflection_data.py
torchref/model/__init__.py
torchref/model/fft.py
torchref/model/model.py
torchref/model/model_ft.py
torchref/model/parameter_wrappers.py
torchref/model/simple_model.py
torchref/refinement/__init__.py
torchref/refinement/base_refinement.py
torchref/refinement/lbfgs_refinement.py
torchref/refinement/loss_state.py
torchref/refinement/optimizers.py
torchref/refinement/targets/__init__.py
torchref/refinement/targets/combined_targets.py
torchref/refinement/targets/targets.py
torchref/refinement/weighting/__init__.py
torchref/refinement/weighting/base_weighting.py
torchref/refinement/weighting/component_weighting.py
torchref/refinement/weighting/es_policy_training.py
torchref/refinement/weighting/policy_weighting.py
torchref/refinement/weighting/random_weighting.py
torchref/restraints/__init__.py
torchref/restraints/builders.py
torchref/restraints/builders_fast.py
torchref/restraints/builders_numba.py
torchref/restraints/restraints.py
torchref/restraints/restraints_helper.py
torchref/restraints/restraints_new.py
torchref/scaling/__init__.py
torchref/scaling/scaler.py
torchref/scaling/scaler_base.py
torchref/scaling/solvent_new.py
torchref/symmetry/__init__.py
torchref/symmetry/cell.py
torchref/symmetry/grid_utils.py
torchref/symmetry/map_symmetry.py
torchref/symmetry/map_symmetry_interpolation.py
torchref/symmetry/reciprocal_symmetry.py
torchref/symmetry/spacegroup.py
torchref/symmetry/symmetry.py
torchref/utils/__init__.py
torchref/utils/debug_utils.py
torchref/utils/gradnorm.py
torchref/utils/hyperparameters.py
torchref/utils/pse.py
torchref/utils/stats.py
torchref/utils/utils.py