.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
benchmarks/published/run_comparisons.py
benchmarks/published/comparator/__init__.py
benchmarks/published/comparator/relation_comparison.py
benchmarks/published/data/blocher/citation.bib
benchmarks/published/data/blocher/inferred_relations_KIN.csv
benchmarks/published/data/blocher/inferred_relations_custom.csv
benchmarks/published/data/blocher/nodes.csv
benchmarks/published/data/blocher/published_exact_relations.csv
benchmarks/published/data/fowler/citation.bib
benchmarks/published/data/fowler/inferred_relations_coeffs.csv
benchmarks/published/data/fowler/inferred_relations_custom.csv
benchmarks/published/data/fowler/nodes.csv
benchmarks/published/data/fowler/published_exact_relations.csv
benchmarks/published/data/rivollat/citation.bib
benchmarks/published/data/rivollat/inferred_relations_READv2.csv
benchmarks/published/data/rivollat/nodes.csv
benchmarks/published/data/rivollat/published_exact_relations.csv
benchmarks/simulations/plot_data.py
benchmarks/simulations/run_simulations.py
benchmarks/simulations/results/data/p_mask_node=0.0_error_rate_scale=0.0.csv
benchmarks/simulations/results/data/p_mask_node=0.0_error_rate_scale=0.5.csv
benchmarks/simulations/results/data/p_mask_node=0.0_error_rate_scale=1.0.csv
benchmarks/simulations/results/data/p_mask_node=0.0_error_rate_scale=2.csv
benchmarks/simulations/results/data/p_mask_node=0.2_error_rate_scale=0.0.csv
benchmarks/simulations/results/data/p_mask_node=0.2_error_rate_scale=0.5.csv
benchmarks/simulations/results/data/p_mask_node=0.2_error_rate_scale=1.0.csv
benchmarks/simulations/results/data/p_mask_node=0.2_error_rate_scale=2.csv
benchmarks/simulations/results/data/p_mask_node=0.4_error_rate_scale=0.0.csv
benchmarks/simulations/results/data/p_mask_node=0.4_error_rate_scale=0.5.csv
benchmarks/simulations/results/data/p_mask_node=0.4_error_rate_scale=1.0.csv
benchmarks/simulations/results/data/p_mask_node=0.4_error_rate_scale=2.csv
benchmarks/simulations/results/data/p_mask_node=0.6_error_rate_scale=0.0.csv
benchmarks/simulations/results/data/p_mask_node=0.6_error_rate_scale=0.5.csv
benchmarks/simulations/results/data/p_mask_node=0.6_error_rate_scale=1.0.csv
benchmarks/simulations/results/data/p_mask_node=0.6_error_rate_scale=2.csv
benchmarks/simulations/results/plots/degree_f1_heatmap.png
benchmarks/simulations/results/plots/pedigree_summary_statistics.png
benchmarks/simulations/results/plots/relation_f1_heatmap.png
benchmarks/simulations/simulator/__init__.py
benchmarks/simulations/simulator/simulated_pedigree.py
src/repare/__init__.py
src/repare/main.py
src/repare/pedigree.py
src/repare/pedigree_reconstructor.py
src/repare.egg-info/PKG-INFO
src/repare.egg-info/SOURCES.txt
src/repare.egg-info/dependency_links.txt
src/repare.egg-info/entry_points.txt
src/repare.egg-info/requires.txt
src/repare.egg-info/top_level.txt