{% extends "layout_bs4.html" %} {% from "utils.html" import comments_panel, pedigree_panel %} {% from "variants/utils.html" import modal_causative %} {% from "variant/variant_details.html" import old_observations %} {% from "variant/utils.html" import rankscore_panel, overlapping_panel, genes_panel, transcripts_panel, sv_alignments, pin_button, causative_button %} {% from "variant/gene_disease_relations.html" import omim_phenotypes, genemodels_panel %} {% from "variant/variant_details.html" import gtcall_panel, frequencies, observations_panel %} {% from "variant/buttons.html" import variant_tag_button, dismiss_variant_button %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - {{ variant.display_name }} {% endblock %} {% block css %} {{ super() }} {% endblock %} {% block top_nav %} {% endblock %} {% block top_nav_right %} {% if config['MAIL_USERNAME'] %} {# Email setting must be setup #} {% endif %} {{ super() }} {% endblock %} {% block content_main %}
{% if variant.missing_data %}
Showing only first 30 genes!
{% endif %}
{{ panel_basics() }}
{{ panel_summary() }}
{{ gtcall_panel(variant) }}
{% set has_pedigree = case.madeline_info and case.individuals|length > 1 %} {% if has_pedigree %}
{{ pedigree_panel(case) }}
{% endif %}
{{ comments_panel(institute, case, current_user, variant.comments, variant_id=variant._id) }}
{{ omim_phenotypes(variant) }}
{{ frequencies(variant) }}
{% if config['LOQUSDB_SETTINGS'] %}
{{ observations_panel(variant, observations, case) }}
{{ old_observations(variant) }}
{% endif %}
{{ rankscore_panel(variant) }}
{{ overlapping_panel(variant, overlapping_vars, case, institute) }}
{{ ext_links(variant) }}
{% if config['MAIL_USERNAME'] %} {# Email setting must be setup #} {{ verify_modal() }} {% endif %} {% if config['MAIL_USERNAME'] %} {# Email setting must be setup #} {{ modal_cancel_verify() }} {% endif %}
{{ modal_causative(case, institute, variant) }} {% endblock %} {% macro panel_basics() %}
Basics
{% endmacro%} {% macro panel_summary() %}
Summary
{% endmacro %} {% macro ext_links(variant) %} {# External links #}
Ensembl DECIPHER
{% endmacro %} {% macro verify_button() %} {% if variant.sanger_ordered %} {% if variant.validation in ['True positive', 'False positive']%} {% else %} {% endif %} {% else %} {% endif %} {% endmacro %} {% macro verify_modal() %}
{% endmacro %} {% macro modal_cancel_verify() %}
{% endmacro %} {% macro verify_form() %} {% endmacro %} {% block scripts %} {{ super() }} {% endblock %}