{% extends "layout_bs4.html" %} {% from "overview/utils.html" import users_table%} {% block title %} {{ super() }} - Institutes {% endblock %} {% block css %} {{ super() }} {% endblock %} {% block top_nav %} {{ super() }} {% endblock %} {% block content_main %}
{{ form.csrf_token() }}
Institute Settings
{{ form.display_name.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Name of the institute which will be displayed on Scout pages.") }} {{ form.display_name(class='form-control', value=institute.display_name) }} {% for error in form.display_name.errors %} {{ error }}
{% endfor %}
{{form.sanger_emails.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Email addresses to send variant verification email to. Only accepts current Scout user emails: exceptions to this can be made by a db admin. Please ask for support!")}}
{% for error in form.sanger_emails.errors %} {{ error }}
{% endfor %}
{{ form.coverage_cutoff.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Read depth considered reliable for displaying variants. Used in coverage reports.") }} {{ form.coverage_cutoff(class='form-control', value=institute.coverage_cutoff) }} {% for error in form.coverage_cutoff.errors %} {{ error }}
{% endfor %}
{{ form.frequency_cutoff.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Lower frequency threshold to display variants. NOTE: used as the institute's default in clinical filter.") }} {{ form.frequency_cutoff(class='form-control', value=institute.frequency_cutoff) }} {% for error in form.frequency_cutoff.errors %} {{ error }}
{% endfor %}
{{ form.pheno_group.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Add a new phenotype group item to the list of phenotype shortcuts below.") }}
{{ form.pheno_abbrev.label(class="control-label",data_toggle="tooltip", data_placement="top", title="A short name for this phenotype group.") }}
{{ form.pheno_groups.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Phenotype groups are used to quickly assign a certain phenotype to a case, on the case page.") }}
{{form.cohorts.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Categories used to subdivide patients")}}
{{ form.institutes.label(class="control-label",data_toggle="tooltip", data_placement="top", title="Allow case sharing only with preselected institutes.") }}
{{ form.submit_btn(class="btn-primary btn") }}

{% endblock %} {% block scripts %} {{ super() }} {% endblock %}