{% macro rankscore_panel(variant) %}
{{ result.category|replace('_', ' ') }} | {% endfor %}
---|
{{ result.score }} | {% endfor %}
Variant | Gene | Type | Combined score | Rank score | Length | Region | Function |
---|---|---|---|---|---|---|---|
{{ overlapping_variant.display_name|truncate(20, True) }} | {{ overlapping_variant.hgnc_symbols|join(', ')|truncate(40, True) }} | {{ overlapping_variant.sub_category|upper }} | {{ variant.rank_score + overlapping_variant.rank_score }} | {{ overlapping_variant.rank_score }} | {{ overlapping_variant.length }} | {{ overlapping_variant.region_annotations|join(', ')|truncate(40, True) }} | {{ overlapping_variant.functional_annotations|join(', ')|truncate(40, True) }} |
No overlapping variants found |
Gene | Ensembl ID | Description |
---|---|---|
{{ gene.common.hgnc_symbol if gene.common else gene.hgnc_id }} | {% if gene.common %} {{ gene.common.ensembl_id }} {% endif %} | {{ gene.common.description if gene.common }} |
Gene | Transcript | RefSeq | Biotype | Mutation type | Strand | Exon | Intron | cDNA | Amino acid |
---|---|---|---|---|---|---|---|---|---|
{{ gene.common.hgnc_symbol if gene.common else gene.hgnc_id }} | {{ transcript.transcript_id }} {% if transcript.is_canonical %} C {% endif %} | {{ transcript.refseq_identifiers|join(',') }} | {{ transcript.biotype or '' }} | {{ transcript.functional_annotations |join(', ') |truncate(20, True) }} | {{ transcript.strand }} | {{ transcript.exon or '' }} | {{ transcript.intron or '' }} | {{ (transcript.coding_sequence_name or '') }} | {{ (transcript.protein_sequence_name or '')|url_decode }} |
Gene | Transcript | Protein | SWISS PROT | Sift | Polyphen | Pfam | ProSite | Smart |
---|---|---|---|---|---|---|---|---|
{{ gene.common.hgnc_symbol if gene.common else gene.hgnc_id }} | {{ transcript.transcript_id }} | {{ transcript.protein_id if transcript.protein_id }} | {% if transcript.swiss_prot != 'unknown' %} {{ transcript.swiss_prot }} {% else %} {{ transcript.swiss_prot }} {% endif %} | {{ transcript.sift_prediction }} | {{ transcript.polyphen_prediction }} | {{ transcript.pfam_domain if transcript.pfam_domain }} | {{ transcript.prosite_profile if transcript.prosite_profile }} | {{ transcript.smart_domain if transcript.smart_domain }} |