{% extends "layout_bs4.html" %} {% block title %} {{ super() }} - Institutes {% endblock %} {% block css %} {{ super() }} {% endblock %} {% block top_nav %} {{ super() }}
Gene | Variant Name | Change | Category | Rank score | Zygosity | Inheritance | ACMG | Case Name | Case Status |
---|---|---|---|---|---|---|---|---|---|
{{ variant.hgnc_symbols|join(', ') if variant.hgnc_symbols else '--'}} |
{{ variant.display_name|truncate(20, True) }} | {{ group_variant.reference|truncate(20, True) }} → {{ group_variant.alternative|truncate(20, True) }} | {{ variant.category|upper }} | {{ variant.rank_score }} {% if variant.category == 'sv' %} (v. {{case.sv_rank_model_version or 'na'}}) {% else %} (v. {{case.rank_model_version or 'na'}}) {% endif %} | {%- for sample in variant.samples -%} {%- for ind in case.individuals -%} {%- if sample.sample_id == ind.individual_id -%} {% set allele_depths = ['ref depth', sample.allele_depths[0]]|join(":") + ' - ' + ['alt depth', sample.allele_depths[1]]|join(":") %} {{sample.genotype_call}} GQ:{{sample.genotype_quality}} {%- endif -%} {%- endfor -%} {%- endfor -%} | {% for model in variant.genetic_models %} {{model}} {% endfor %} | ACMG: {% if 'acmg_classification' in variant %} {{acmg_map[variant.acmg_classification].short}} {% else %} - {% endif %} | {{ case.display_name }} | {{ case.status }} |