LICENSE
MANIFEST.in
README.md
setup.py
sequenoscope/__init__.py
sequenoscope/constant.py
sequenoscope/main.py
sequenoscope/version.py
sequenoscope.egg-info/PKG-INFO
sequenoscope.egg-info/SOURCES.txt
sequenoscope.egg-info/dependency_links.txt
sequenoscope.egg-info/entry_points.txt
sequenoscope.egg-info/requires.txt
sequenoscope.egg-info/top_level.txt
sequenoscope/analyze/__init__.py
sequenoscope/analyze/analyze.py
sequenoscope/analyze/bam.py
sequenoscope/analyze/fastP.py
sequenoscope/analyze/fastq_extractor.py
sequenoscope/analyze/kat.py
sequenoscope/analyze/mash.py
sequenoscope/analyze/minimap2.py
sequenoscope/analyze/processing.py
sequenoscope/analyze/pytest_test.py
sequenoscope/analyze/seq_manifest.py
sequenoscope/filter_ONT/__init__.py
sequenoscope/filter_ONT/barcode_statistics.py
sequenoscope/filter_ONT/filter_ONT.py
sequenoscope/filter_ONT/pytest_test.py
sequenoscope/filter_ONT/seq_summary_processing.py
sequenoscope/filter_ONT/seqtk.py
sequenoscope/plot/__init__.py
sequenoscope/plot/decision_bar_chart.py
sequenoscope/plot/plot.py
sequenoscope/plot/pytest_test.py
sequenoscope/plot/seq_manifest_plots.py
sequenoscope/plot/summary_table.py
sequenoscope/plot/violin_plot.py
sequenoscope/utils/__init__.py
sequenoscope/utils/parser.py
sequenoscope/utils/sequence_class.py