# Custom
configs/allocate/*
configs/annotate/*
configs/clean/*
configs/dataset/*
configs/experiment/*
configs/local/*
configs/segmentation/*
configs/visualize/*
data
spatial
logs
.env
.autoenv

notebooks

# Add exection for example configs for resolve and vizgen
!configs/allocate/resolve_liver.yaml
!configs/allocate/vizgen_example.yaml
!configs/annotate/resolve_liver.yaml
!configs/clean/resolve_liver.yaml
!configs/clean/vizgen_example.yaml
!configs/dataset/resolve_liver.yaml
!configs/dataset/resolve_liver_2.yaml
!configs/dataset/vizgen_example.yaml
!configs/experiment/resolve_liver.yaml
!configs/experiment/vizgen_example.yaml
!configs/local/default.example.yaml
!configs/segmentation/cellpose_resolve_liver.yaml
!configs/segmentation/cellpose_vizgen_example.yaml
!configs/visualize/resolve_liver.yaml

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/
.napari_cache

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask instance folder
instance/

# Sphinx documentation
/docs/generated/
/docs/_build/

# MkDocs documentation
/site/

# PyBuilder
target/

# Pycharm and VSCode
.idea/
venv/
.vscode/

# IPython Notebook
.ipynb_checkpoints

# pyenv
.python-version

# OS
.DS_Store

# written by setuptools_scm
**/_version.py

# asv benchmarks
.asv/**
