LICENSE
README.md
pyproject.toml
parascape/__init__.py
parascape/__main__.py
parascape/ambient.py
parascape/analysis_panel.py
parascape/annotations.py
parascape/app.py
parascape/archive.py
parascape/artifacts.py
parascape/baselines.py
parascape/benchmark.py
parascape/build_graph.py
parascape/calibration.py
parascape/capabilities.py
parascape/cellcycle.py
parascape/celldiagram.py
parascape/chat.py
parascape/chromatin.py
parascape/claims.py
parascape/clustering.py
parascape/codons.py
parascape/conformal_records.py
parascape/console.py
parascape/corpus.py
parascape/dataset_browser.py
parascape/dataset_selection.py
parascape/dataset_space.py
parascape/dataset_space_inputs.py
parascape/datasets.py
parascape/deposits.py
parascape/discover.py
parascape/discoveries_panel.py
parascape/discovery.py
parascape/discovery_labels.py
parascape/drug_sensitivity.py
parascape/embedding.py
parascape/enteric.py
parascape/evidence.py
parascape/expression.py
parascape/fetch_names.py
parascape/forest_records.py
parascape/functional_agreement.py
parascape/functional_class_view.py
parascape/functional_coverage.py
parascape/functional_domain_profiles.py
parascape/functional_domains.py
parascape/functional_exclusions.py
parascape/functional_ontology.py
parascape/functional_pair_class.py
parascape/functional_profile_targets.py
parascape/functional_results.py
parascape/gallery.py
parascape/gene_evidence.py
parascape/gene_evidence_browser.py
parascape/glass.py
parascape/gpu.py
parascape/graphspace.py
parascape/ground_truth.py
parascape/group_ratios.py
parascape/guided.py
parascape/guided_panel.py
parascape/help_index.py
parascape/help_search.py
parascape/hf_publish.py
parascape/holdout_cv.py
parascape/host.py
parascape/host_foundation_scorecard.py
parascape/identity.py
parascape/iedb.py
parascape/importer.py
parascape/install_gpu.py
parascape/interaction_studies.py
parascape/interactions.py
parascape/interpret.py
parascape/inventory.py
parascape/jobs.py
parascape/label_records.py
parascape/label_space.py
parascape/label_space_browser.py
parascape/leakage.py
parascape/lighting.py
parascape/lipids.py
parascape/literature.py
parascape/localization.py
parascape/lod.py
parascape/logging_util.py
parascape/metabolites.py
parascape/methods.py
parascape/metrics.py
parascape/network_prediction.py
parascape/objectives.py
parascape/optimize.py
parascape/organisms.py
parascape/packs.py
parascape/palmitome.py
parascape/paths.py
parascape/pf_graph.py
parascape/phenotype_screen.py
parascape/plasmodium.py
parascape/precompute_features.py
parascape/precompute_jobs.py
parascape/prediction.py
parascape/prioritization.py
parascape/proteomics.py
parascape/provenance.py
parascape/query.py
parascape/questions.py
parascape/rays.py
parascape/recipes.py
parascape/record_scorecards.py
parascape/report.py
parascape/resistance.py
parascape/results.py
parascape/runs.py
parascape/scorecard.py
parascape/scorecard_browser.py
parascape/scorecard_view.py
parascape/screens.py
parascape/search.py
parascape/searches.py
parascape/sequence_features.py
parascape/slot_tree.py
parascape/slots.py
parascape/small_tables.py
parascape/source_refusals.py
parascape/sources.py
parascape/splits.py
parascape/sprite.py
parascape/star_edges.py
parascape/star_map.py
parascape/stopping.py
parascape/strategies.py
parascape/strategy_card.py
parascape/strategy_catalog.py
parascape/strategy_explainers.py
parascape/strategy_graph.py
parascape/strategy_learning.py
parascape/strategy_panel.py
parascape/structure_catalog.py
parascape/structures.py
parascape/techniques.py
parascape/theme.py
parascape/track_record.py
parascape/transfer_records.py
parascape/tuning.py
parascape/umap_gallery.py
parascape/umap_gallery_panel.py
parascape/validate.py
parascape/value_conformal_records.py
parascape/value_records.py
parascape/variation.py
parascape/verify.py
parascape/workflows.py
parascape.egg-info/PKG-INFO
parascape.egg-info/SOURCES.txt
parascape.egg-info/dependency_links.txt
parascape.egg-info/entry_points.txt
parascape.egg-info/requires.txt
parascape.egg-info/top_level.txt
parascape/data/af3_features.json
parascape/data/af3_features.parquet
parascape/data/af3_manifest.parquet
parascape/data/antisense_level.tsv
parascape/data/cdpk1_substrates.tsv
parascape/data/claim_recipes.parquet
parascape/data/claims.parquet
parascape/data/crosslink_models.parquet
parascape/data/crosslink_partners.tsv
parascape/data/deposit_brady_subtypes.tsv
parascape/data/deposit_crispr_glucose_limitation.tsv
parascape/data/deposit_crispr_invivo_composite.tsv
parascape/data/deposit_crispr_parasite_density.tsv
parascape/data/deposit_crispr_serum_restriction.tsv
parascape/data/deposit_gse302107_riboseq.tsv
parascape/data/deposit_gse302108_utr5.tsv
parascape/data/deposit_host_bmdm_baseline.tsv
parascape/data/deposit_host_hepatocyte_pf_infection.tsv
parascape/data/deposit_host_hff_tg_infection.tsv
parascape/data/deposit_host_k562_rhoptry_gene_evidence.parquet
parascape/data/deposit_host_k562_rhoptry_screen.tsv
parascape/data/deposit_iron_depletion_proteome.tsv
parascape/data/deposit_mrna_decay_gse329845.tsv
parascape/data/deposit_organelle_surface_turboid.tsv
parascape/data/deposit_pf_chromatin_proxiome.tsv
parascape/data/deposit_pf_committed_proteome.tsv
parascape/data/deposit_pf_febrile_phospho.tsv
parascape/data/deposit_pf_field_variation.tsv
parascape/data/deposit_pf_gametocyte_proteome.tsv
parascape/data/deposit_pf_hsp90_chemoproteome.tsv
parascape/data/deposit_pf_latency_transcriptome.tsv
parascape/data/deposit_pf_m6a_nanopore.tsv
parascape/data/deposit_pf_meltome.tsv
parascape/data/deposit_pf_mrna_dynamics.tsv
parascape/data/deposit_pf_pb_fertility_transfer.tsv
parascape/data/deposit_pf_resistome.tsv
parascape/data/deposit_pf_rna_dependence.tsv
parascape/data/deposit_pf_spatial_proteome.tsv
parascape/data/deposit_pf_target_engagement.tsv
parascape/data/escrt_recruitment_maxvit.tsv
parascape/data/escrt_recruitment_xgboost.tsv
parascape/data/esm_features.parquet
parascape/data/esm_manifest.parquet
parascape/data/functional_agreement.json
parascape/data/functional_agreement_uncertainty.json
parascape/data/functional_domain_names.json
parascape/data/functional_results.json
parascape/data/graph.npz
parascape/data/host_bridges.parquet
parascape/data/host_foundation_summary.json
parascape/data/host_interactions.parquet
parascape/data/host_projection_withdrawals.json
parascape/data/host_species_migration.json
parascape/data/hs_host_proteins.parquet
parascape/data/iedb_bcell_epitopes.tsv
parascape/data/interaction_studies.parquet
parascape/data/interaction_study_members.parquet
parascape/data/m6a_peaks.tsv
parascape/data/melting_temperature.tsv
parascape/data/mentions.parquet
parascape/data/metabolites.parquet
parascape/data/mm_host_proteins.parquet
parascape/data/mrna_stability.tsv
parascape/data/myristoylome.tsv
parascape/data/nodes.parquet
parascape/data/pf_graph.npz
parascape/data/pf_host_bridges.parquet
parascape/data/pf_mentions.parquet
parascape/data/pf_nodes.parquet
parascape/data/plasmodb_cds.tsv.gz
parascape/data/plasmodb_identity.tsv
parascape/data/pvm_proximity.tsv
parascape/data/questions.json
parascape/data/secretome_partition.tsv
parascape/data/sexual_stages.tsv
parascape/data/slot_hierarchy.json
parascape/data/slots.json
parascape/data/star_edges.parquet
parascape/data/strategy_calibration.json
parascape/data/strategy_examples.json
parascape/data/strategy_selftests.json
parascape/data/structure_search.parquet
parascape/data/structure_search_perlabel.parquet
parascape/data/study_licenses.parquet
parascape/data/toxodb_arginine_methylation.tsv
parascape/data/toxodb_cds.tsv.gz
parascape/data/toxodb_ec_numbers.tsv
parascape/data/toxodb_enteroepithelial.tsv
parascape/data/toxodb_epitopes.tsv
parascape/data/toxodb_gene_location.tsv
parascape/data/toxodb_h4_acetylation.tsv
parascape/data/toxodb_identity.tsv
parascape/data/toxodb_macrophage.tsv
parascape/data/toxodb_nanopore_isoforms.tsv
parascape/data/toxodb_palmitome_hydroxylamine.tsv
parascape/data/toxodb_palmitome_palmitate.tsv
parascape/data/toxodb_strain_gt1.tsv
parascape/data/toxodb_strain_snps.tsv
parascape/data/toxodb_strain_veg.tsv
parascape/data/track_record.parquet
parascape/data/umap_gallery.json
parascape/data/umap_gallery.npz
parascape/data/umap_gallery_scores.tsv
parascape/data/hf_release/README.md
parascape/data/hf_release/studies.parquet
parascape/data/hf_release/study_gene_membership.parquet
parascape/data/icons/Animal_cells.svg
parascape/data/icons/Apicomplexa_cells.svg
parascape/data/icons/logo_01_constellation_1.svg
parascape/data/icons/logo_02_constellation_2.svg
parascape/data/icons/logo_03_constellation_3.svg
parascape/data/icons/logo_04_constellation_4.svg
parascape/data/icons/logo_05_constellation_5.svg
parascape/data/icons/logo_06_constellation_6.svg
parascape/data/icons/logo_07_constellation_7.svg
parascape/data/icons/logo_08_constellation_8.svg
parascape/data/icons/logo_09_apicoplast_1.svg
parascape/data/icons/logo_10_apicoplast_2.svg
parascape/data/icons/logo_11_apicoplast_3.svg
parascape/data/icons/logo_12_apicoplast_4.svg
parascape/data/icons/logo_13_apicoplast_5.svg
parascape/data/icons/logo_14_apicoplast_6.svg
parascape/data/icons/logo_15_crescent_1.svg
parascape/data/icons/logo_16_crescent_2.svg
parascape/data/icons/logo_17_crescent_3.svg
parascape/data/icons/logo_18_crescent_4.svg
parascape/data/icons/logo_19_crescent_5.svg
parascape/data/icons/logo_20_crescent_6.svg
parascape/data/icons/logo_21_orbit_1.svg
parascape/data/icons/logo_22_orbit_2.svg
parascape/data/icons/logo_23_orbit_3.svg
parascape/data/icons/logo_24_orbit_4.svg
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parascape/data/icons/logo_31_letter_s_5.svg
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parascape/data/icons/logo_35_dark_field_2.svg
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parascape/data/icons/logo_37_dark_field_4.svg
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parascape/data/icons/logo_43_galaxy_3.svg
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parascape/data/icons/logo_49_galaxy_9.svg
parascape/data/icons/parascape.svg
parascape/spaces/__init__.py
parascape/spaces/human.py
tests/test_analysis.py
tests/test_analysis_panel.py
tests/test_annotations.py
tests/test_app_contexts.py
tests/test_app_controls.py
tests/test_app_gene_evidence.py
tests/test_app_menus.py
tests/test_app_polish.py
tests/test_app_smoke.py
tests/test_archive.py
tests/test_artifacts.py
tests/test_baselines.py
tests/test_benchmark.py
tests/test_benchmark_summary.py
tests/test_build_graph.py
tests/test_calibration.py
tests/test_calibration_publish.py
tests/test_capabilities.py
tests/test_cellcycle.py
tests/test_celldiagram.py
tests/test_chat_stream.py
tests/test_chromatin.py
tests/test_claim_verifier_audit.py
tests/test_claims.py
tests/test_clustering.py
tests/test_codons.py
tests/test_conformal_records.py
tests/test_dataset_browser.py
tests/test_dataset_scripts.py
tests/test_dataset_selection.py
tests/test_dataset_selection_audit.py
tests/test_dataset_space.py
tests/test_dataset_space_inputs.py
tests/test_datasets.py
tests/test_deck.py
tests/test_deposits.py
tests/test_discover_cli.py
tests/test_discovery.py
tests/test_discovery_labels.py
tests/test_display.py
tests/test_docs.py
tests/test_docstrings.py
tests/test_documented_numbers.py
tests/test_drug_sensitivity.py
tests/test_embedding_edges.py
tests/test_enteric.py
tests/test_evidence.py
tests/test_expression.py
tests/test_forest_records.py
tests/test_functional_agreement.py
tests/test_functional_agreement_ui.py
tests/test_functional_class_view.py
tests/test_functional_coverage.py
tests/test_functional_coverage_ui.py
tests/test_functional_domain_profiles.py
tests/test_functional_domains.py
tests/test_functional_exclusions.py
tests/test_functional_native_ec_reader.py
tests/test_functional_ontology.py
tests/test_functional_pair_class.py
tests/test_functional_profile_controls.py
tests/test_functional_profile_knn.py
tests/test_functional_profile_results.py
tests/test_functional_profile_targets.py
tests/test_functional_results.py
tests/test_gallery.py
tests/test_gene_evidence.py
tests/test_gene_evidence_browser.py
tests/test_gl_compat.py
tests/test_glass.py
tests/test_gpu.py
tests/test_graphspace.py
tests/test_ground_truth.py
tests/test_group_ratios.py
tests/test_guided.py
tests/test_help_search.py
tests/test_holdout_cv.py
tests/test_host.py
tests/test_host_candidate_reviews.py
tests/test_host_foundation_scorecard.py
tests/test_host_species.py
tests/test_human_gene_foundation.py
tests/test_identity_and_corpus.py
tests/test_iedb.py
tests/test_importer.py
tests/test_install_gpu.py
tests/test_interaction_studies.py
tests/test_interactions.py
tests/test_interpret.py
tests/test_inventory.py
tests/test_jobs_console_chat.py
tests/test_label_records.py
tests/test_label_space.py
tests/test_label_space_browser.py
tests/test_leakage.py
tests/test_leakage_attacks.py
tests/test_lipids.py
tests/test_literature_layers.py
tests/test_localization.py
tests/test_lod.py
tests/test_logging.py
tests/test_logos.py
tests/test_metabolites.py
tests/test_methods.py
tests/test_metrics.py
tests/test_network_prediction.py
tests/test_notebook.py
tests/test_objectives.py
tests/test_optimize.py
tests/test_organisms.py
tests/test_packaging.py
tests/test_packs.py
tests/test_palmitome.py
tests/test_paths.py
tests/test_pf_functional_ec_controls.py
tests/test_pf_functional_ec_forest.py
tests/test_pf_functional_ec_knn.py
tests/test_pf_graph.py
tests/test_phenotype_screen.py
tests/test_pipeline_end_to_end.py
tests/test_plasmodium.py
tests/test_pmc_recovery.py
tests/test_precompute_features.py
tests/test_precompute_jobs.py
tests/test_prediction.py
tests/test_primary_table_recovery.py
tests/test_prioritization.py
tests/test_proteomics.py
tests/test_provenance.py
tests/test_publishing.py
tests/test_query.py
tests/test_questions.py
tests/test_questions_tab.py
tests/test_rays.py
tests/test_readme.py
tests/test_recipes.py
tests/test_record_scorecards.py
tests/test_release.py
tests/test_report.py
tests/test_resistance.py
tests/test_results.py
tests/test_runs.py
tests/test_scorecard.py
tests/test_scorecard_browser.py
tests/test_scorecard_view.py
tests/test_screens.py
tests/test_search.py
tests/test_searches.py
tests/test_sequence_features.py
tests/test_slot_tree.py
tests/test_slots.py
tests/test_small_tables.py
tests/test_source_consolidation.py
tests/test_source_recovery.py
tests/test_sources.py
tests/test_space_layouts.py
tests/test_splits.py
tests/test_sprite.py
tests/test_star_map.py
tests/test_strategies.py
tests/test_strategy_cards.py
tests/test_strategy_edges.py
tests/test_strategy_panel.py
tests/test_structure_catalog.py
tests/test_structures.py
tests/test_theme_and_literature.py
tests/test_track_record.py
tests/test_transfer_records.py
tests/test_tuning_edges.py
tests/test_umap_gallery.py
tests/test_validate.py
tests/test_value_conformal_records.py
tests/test_value_records.py
tests/test_variation.py
tests/test_verify.py
tests/test_visual.py
tests/test_wheel.py
tests/test_work_watchdog.py
tests/test_workflows.py