__pycache__/
*.py[cod]
*.egg-info/
.eggs/
build/
dist/
.venv/
venv/
.env
.pytest_cache/
.ruff_cache/
.mypy_cache/
.coverage
htmlcov/
.ipynb_checkpoints/
.DS_Store
uv.lock

# Generated demo data — see examples/make_demo_data.py
examples/*.bw
examples/regions.bed
examples/signals.tsv
examples/enrichment.tsv

# Local agent instructions and notes
CLAUDE.md
claude_comments/
