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CHANGES.rst
LICENSE
README.md
pyproject.toml
uv.lock
.github/workflows/test.yml
.github/workflows/test_python_matrix.yml
.vscode/settings.json
docs/conf.py
docs/index.rst
docs/_static/code_structure.png
docs/_static/favicon.ico
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docs/_templates/autoapi/python/attribute.rst
docs/_templates/autoapi/python/class.rst
docs/_templates/autoapi/python/data.rst
docs/_templates/autoapi/python/exception.rst
docs/_templates/autoapi/python/function.rst
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docs/source/changes_link.rst
docs/source/contributions.rst
docs/source/design.rst
docs/source/glossary.rst
docs/source/installation.rst
docs/source/introduction.rst
docs/source/license.rst
docs/source/logging.rst
docs/tutorials/notebook_execution_table.md
docs/tutorials/tutorials.rst
docs/tutorials/notebooks/01_Introduction.ipynb
docs/tutorials/notebooks/02_Three_state_simulation.ipynb
docs/tutorials/notebooks/03_Cy5_simulation.ipynb
docs/tutorials/notebooks/04_dSTORM_simulation.ipynb
docs/tutorials/notebooks/06_Cy5_homoFRET_simulation.ipynb
docs/tutorials/notebooks/07_Two_fluorophore_dSTORM_simulation.ipynb
docs/tutorials/notebooks/adding_photophys_systems.ipynb
src/fluopy/__init__.py
src/fluopy/_version.py
src/fluopy/analysis.py
src/fluopy/blinking.py
src/fluopy/distributions.py
src/fluopy/emissions.py
src/fluopy/fcs.py
src/fluopy/figure.py
src/fluopy/fitting.py
src/fluopy/fluo_data.py
src/fluopy/fluopy_types.py
src/fluopy/fluorophores.py
src/fluopy/formulas.py
src/fluopy/kappa_squared.py
src/fluopy/miscellaneous.py
src/fluopy/network.py
src/fluopy/prediction.py
src/fluopy/routines.py
src/fluopy/simulation.py
src/fluopy/simulation_tcspc.py
src/fluopy/transitions.py
src/fluopy.egg-info/PKG-INFO
src/fluopy.egg-info/SOURCES.txt
src/fluopy.egg-info/dependency_links.txt
src/fluopy.egg-info/requires.txt
src/fluopy.egg-info/top_level.txt
src/fluopy/fluorophore_spectra/atto643_data/absorption_s0.csv
src/fluopy/fluorophore_spectra/atto643_data/emission.csv
src/fluopy/fluorophore_spectra/cy5_data/absorption_cis.csv
src/fluopy/fluorophore_spectra/cy5_data/absorption_off.csv
src/fluopy/fluorophore_spectra/cy5_data/absorption_s0.csv
src/fluopy/fluorophore_spectra/cy5_data/absorption_s1.csv
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src/fluopy/fluorophore_spectra/testing_data_1/absorption_s0.csv
src/fluopy/fluorophore_spectra/testing_data_1/absorption_t1.csv
src/fluopy/fluorophore_spectra/testing_data_1/emission.csv
src/fluopy/fluorophore_spectra/testing_data_2/absorption_s0.csv
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tests/__init__.py
tests/conftest.py
tests/test_analysis.py
tests/test_blinking.py
tests/test_distributions.py
tests/test_emissions.py
tests/test_fcs.py
tests/test_figure.py
tests/test_fluo_data.py
tests/test_fluopy.py
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tests/test_fluorophores.py
tests/test_formulas.py
tests/test_import.py
tests/test_kappa_squared.py
tests/test_miscellaneous.py
tests/test_network.py
tests/test_predictions.py
tests/test_simulation.py
tests/test_simulation_tcspc.py
tests/test_transitions.py
tests/test_data/event_time_points_em_large.npy
tests/test_data/event_time_points_em_very_large.npy
tests/test_data/event_time_series_em_large.csv
tests/test_data/event_time_series_em_very_large.csv