# Python
__pycache__/
*.py[cod]
*.egg-info/
dist/
build/
eggs/
*.egg

# Virtual environment
.venv/
venv/

# IDE
.vscode/
.idea/

# Testing
.pytest_cache/
htmlcov/
.coverage
*.cover

# Codegraph
.codegraph/

# OS
.DS_Store
Thumbs.db

# Jupyter
.ipynb_checkpoints/

# R
.Rhistory
.RData
.Rproj.user/

# Large data / results directories
data/
results/
comparison/results_compare/
comparison/results_seurat/

# Large binary & raw data files (in any directory)
*.h5ad
*.rds
*.tar.gz
*.mtx
