DAY-EC activated.
DAY-EC activated.
=== mount dir ===
drwxr-xr-x 4 root root 33280 May 30 02:45 /fsx/run_dir_mounts/20260513_ONT_HG003
=== top level ===
d /fsx/run_dir_mounts/20260513_ONT_HG003/_lsmc_ingest
f /fsx/run_dir_mounts/20260513_ONT_HG003/_lsmc_ingest/receipt.json
f /fsx/run_dir_mounts/20260513_ONT_HG003/_lsmc_ingest/transfer-log.json
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/sample_sheet_PBM13745_20260513_2116_5a9ea63e.csv
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/throughput_PBM13745_5a9ea63e_ee86bd52.csv
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/report_PBM13745_20260513_2150_5a9ea63e.md
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/pod5
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/output_hash_PBM13745_20260513_2150_5a9ea63e.csv
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/report_PBM13745_20260513_2150_5a9ea63e.html
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/offload_summary_d49120c5-6cd1-40ad-acc8-f90e5c2887f0.txt
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/other_reports
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/barcode_alignment_PBM13745_5a9ea63e_ee86bd52.tsv
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/pore_activity_PBM13745_5a9ea63e_ee86bd52.csv
d /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_fail
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/report_PBM13745_20260513_2150_5a9ea63e.json
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/final_summary_PBM13745_5a9ea63e_ee86bd52.txt
f /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/sequencing_summary_PBM13745_5a9ea63e_ee86bd52.txt
f /fsx/run_dir_mounts/20260513_ONT_HG003/OOW.done
=== fastq count sample ===
1602 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode14/PBM13745_pass_barcode14_5a9ea63e_ee86bd52_0.fastq.gz
7352 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode14/PBM13745_pass_barcode14_5a9ea63e_ee86bd52_1.fastq.gz
10851 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode14/PBM13745_pass_barcode14_5a9ea63e_ee86bd52_2.fastq.gz
1154 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode13/PBM13745_pass_barcode13_5a9ea63e_ee86bd52_0.fastq.gz
3350 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode13/PBM13745_pass_barcode13_5a9ea63e_ee86bd52_1.fastq.gz
3667 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode19/PBM13745_pass_barcode19_5a9ea63e_ee86bd52_1.fastq.gz
11094 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode19/PBM13745_pass_barcode19_5a9ea63e_ee86bd52_0.fastq.gz
18826624 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_53.fastq.gz
22719942 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_43.fastq.gz
84505161 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_14.fastq.gz
2062393 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_73.fastq.gz
54795666 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_24.fastq.gz
7889253 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_63.fastq.gz
79889596 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_8.fastq.gz
27249010 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_34.fastq.gz
76436073 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_7.fastq.gz
23954999 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_44.fastq.gz
78484821 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_13.fastq.gz
17845181 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_54.fastq.gz
9038063 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_64.fastq.gz
34065575 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_0.fastq.gz
28568041 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_33.fastq.gz
58216183 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_23.fastq.gz
2276755 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_72.fastq.gz
23701182 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_25.fastq.gz
14433865 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_62.fastq.gz
73739988 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_6.fastq.gz
24403321 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_35.fastq.gz
77279153 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_9.fastq.gz
20734302 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_52.fastq.gz
23334154 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_42.fastq.gz
63247006 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_15.fastq.gz
9089784 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_65.fastq.gz
28718981 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_32.fastq.gz
64133963 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_1.fastq.gz
60595221 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_22.fastq.gz
23046904 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_45.fastq.gz
66708446 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_12.fastq.gz
18276707 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_55.fastq.gz
66964174 /fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/unclassified/PBM13745_pass_unclassified_5a9ea63e_ee86bd52_11.fastq.gz
=== sample reads ===
first_fastq=/fsx/run_dir_mounts/20260513_ONT_HG003/HG003/20260513_2149_1D_PBM13745_5a9ea63e/fastq_pass/barcode14/PBM13745_pass_barcode14_5a9ea63e_ee86bd52_0.fastq.gz
@5b1b37a9-4512-46df-9479-dca05e129822 runid=5a9ea63e-e4a2-4dfe-914d-ed07de638538 ch=658 start_time=2026-05-13T22:22:27.069903+00:00 flow_cell_id=PBM13745 basecall_gpu=NVIDIA_A100_80GB_PCIe protocol_group_id=20260513_ONT_HG003 sample_id=HG003 barcode=barcode14 barcode_alias=barcode14 parent_read_id=5b1b37a9-4512-46df-9479-dca05e129822 basecall_model_version_id=dna_r10.4.1_e8.2_400bps_hac@v5.2.0
ATGTGTCATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAAACGAGTCTCTTGGGACCCATAGACAGCACCTCAGTCACCTCCCATCAGGTCCTTCCTCGACATATGGGGATTACAATTTGAGATGAGATTTAGGTGGGGACACAGAGCCAAACTATATCACCCCACACCCCAGCTTGCAGGAATCTAGTCATCCATATATTGTTGATATGTGTGTTTTACTGGTAATTTGTGCAAAAAGGTCAAATCACACAATGTCAGCACCTCACTGCAGGTCAGCACTGGGACTGTGGACAGCTCCTCTCCTCCCACTCATCCTCCCGCCCTCTGATCACTTTCAAGAACACTGAGGGGCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATCCAAAAAGTGCCAGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAGACTTTGTCTAAAAAACAAAAAACAAAAAACAAAAAAAAAACACTGGGCCCTGAGAGGTGGCTCATGCCTGTAACAATCCCAGCACTTTTGGAGGCTGAGGCAGGAGGATTGCTTAAGCCCAGGAAGAGCTTGGGCAATATAGCAAGACCCAGACCCAGTCTCAATCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCGCTGCGAGCTCCGCCTCCCGGGTTCACGCCATTCTCCCGCCTCAGCCTCTGGAGTAGCTGGTACTACATGCGCCCGCCACCACTCCTGGCCATTTATTTTTCATTTTTTATTTTTAGTAGAGACGGGGTTTCACCGTGTGTTAGCCAGGTTGGTCTCGATCTCCTGACCTCGTGATCCCCCCGCCTCAGCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGAGCAAGACCCAGTCTCCACAAAAAGAAATTAAAAAGCAACACTGGGGCCAGGCGTATAGGCTCACACCTGTAATTCCAGTTTGGGAAGCCGAGGTGGT
+
$$%$&('$%)*,-110289ABA??=;999<DDCDBBB@???EFL<8889<<?AE@?<><>AAG:9:?>?@?==>>>@@@BCCB@?A?@@?;::;>?C@@@=99:;CBBA><==>DEDDCDEFDFDEDCECBBBDCB>>>=???ABFGFFDCBBFGFDBABAABBA@AACBAC@BAAAABBB@?==BA>>;;==>CB@@ABCAADBCCBDE@A??@@A@CDLICBA<;;<DHGEEBCBCFIKG?<<ACEHECBAAA@@@@BBABC>>>>AB@@AAA@@ABAAA?ABA@@>?@@A;<<?FA=988<>ACCA?B?@BB@AA>?>=74448<=DCDHFCCCCFGFEBCCCFGFFC><=>9888=@A;<<>FJHILFA@@AGGSJKMKKNJOPLJLSKIIIQMKDABBEA===>>??AF4345JKPMNJKQOKHOK???@HEEDEHGGIGDBBBCGJIH8778POJINSJKSNKIPSNGDSSDA@??APSLHGGHHJPEBBCGQJSKJSSNKQLSKLNFQSMNSNJOMKLOPSMKJILKIMLQJJQKSSNKSEAABDKONIOLFGEIPKKCCCCPSSKIOSLOSJKJFHISNIIHHHLLGFFFMKKNJNILHJHOPMRMKLIHHLIGEDC@@7667?>GFISSSEIGIHDD=::;GKMC=;FHSSSSSSLHILGGKIHFIIGJCCCBGJNKKKIJNJRJLJGFCBDDSKJHE@9>DNSJGHGIGKLSMMJGLLSSIFGFMILQLLKEOJNSHJIGHHGMHIJNMRMIJGGNM@@@AJGC<94449999:;CDEFHPJNPNSNSNPLHFB6252567:>BIKJKKJIIIIISQSMHHNSKHGJGLHOMSPKMSKJ9999IQMLKIJMMKLNMKKKSNSMMMSPNONHISJBCAEJ8778GGLSIKAJHFBDBC@HSHIGFGHGKKJH=<<=>;<;:;FGDA@CJMINIJBF><820246;=@AA@<BGESSLISSSSSJLE@@@BEGQMSSPFFDMSSSI@JQSSNHIMSSQNOGFIRIKQSMHMLQKHASNEDFHLRSE=CCSKSKLJSSSQMOSMLLSMFGEE=AB=9:=9;<EED@>8/0IFEFNSGISNMPRHHMKJBJHAA@BCDECCBAECDHC=<<=;;;?@ACGJDDBBFEGFECCB@BJMMFIMNLIJKSSKBBDDFGGEIILKIIHFC?><:899<CHJKIHHJQSHSMMJHA=<<=<;76/2..-333/)('
