command_id=7e991985-4dba-44ed-b079-0e1d2fed77a1
DAY-EC activated.
DAY-EC activated.
__DATE__=2026-06-03T06:29:53+00:00
__SQUEUE_BEFORE__
             JOBID    PARTITION                                               NAME    STATE       TIME      NODES NODELIST(REASON)
__PANE__
d_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fsx/run_dir_mounts
/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_d
evshm_argfix_20260603T0620Z/normalized.SampleSheet.csv
    wildcards: lane=L003, shard=0006_tiles0655-0784
    threads: 192
    resources: mem_mb=1200000, mem_mib=1144410, disk_mb=1000, disk_mib=954, tmpd
ir=<TBD>, threads=192, time=5440, partition=i192bigmem, vcpu=192, distribution=b
lock, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm/dayoa_bclconvert_tmp bash workflow/scripts/run_bclconvert_lane.s
h docker://nfcore/bclconvert:4.0.3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0006_til
es0655-0784 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleShee
t.csv 3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0006_ti
les0655-0784/SampleSheet.csv false false false 1 24 4 64 32 false true 1000 '{"B
arcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' __dayoa_no_f
orce__ 192 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.L0
03.0006_tiles0655-0784.log /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_f
astqs/L003/0006_tiles0655-0784/Reports/fastq_list.csv /fsx/run_dir_mounts/202605
14_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_a
rgfix_20260603T0620Z/tile_fastqs/L003/0006_tiles0655-0784/Reports/Demultiplex_St
ats.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0006_ti
les0655-0784/bclconvert.done s_3_2367+s_3_2368+s_3_2369+s_3_2370+s_3_2371+s_3_23
72+s_3_2373+s_3_2374+s_3_2375+s_3_2376+s_3_2377+s_3_2378+s_3_2379+s_3_2380+s_3_2
381+s_3_2382+s_3_2383+s_3_2384+s_3_2385+s_3_2386+s_3_2387+s_3_2388+s_3_2389+s_3_
2390+s_3_2391+s_3_2392+s_3_2393+s_3_2394+s_3_2395+s_3_2396+s_3_2397+s_3_2398+s_3
_2401+s_3_2402+s_3_2403+s_3_2404+s_3_2405+s_3_2406+s_3_2407+s_3_2408+s_3_2409+s_
3_2410+s_3_2411+s_3_2412+s_3_2413+s_3_2414+s_3_2415+s_3_2416+s_3_2417+s_3_2418+s
_3_2419+s_3_2420+s_3_2421+s_3_2422+s_3_2423+s_3_2424+s_3_2425+s_3_2426+s_3_2427+
s_3_2428+s_3_2429+s_3_2430+s_3_2431+s_3_2432+s_3_2433+s_3_2434+s_3_2435+s_3_2436
+s_3_2437+s_3_2438+s_3_2439+s_3_2440+s_3_2441+s_3_2442+s_3_2443+s_3_2444+s_3_244
5+s_3_2446+s_3_2447+s_3_2448+s_3_2449+s_3_2450+s_3_2451+s_3_2452+s_3_2453+s_3_24
54+s_3_2455+s_3_2456+s_3_2457+s_3_2458+s_3_2459+s_3_2460+s_3_2461+s_3_2462+s_3_2
463+s_3_2464+s_3_2465+s_3_2466+s_3_2467+s_3_2468+s_3_2469+s_3_2470+s_3_2471+s_3_
2472+s_3_2473+s_3_2474+s_3_2475+s_3_2476+s_3_2477+s_3_2478+s_3_2479+s_3_2480+s_3
_2481+s_3_2482+s_3_2483+s_3_2484+s_3_2485+s_3_2486+s_3_2487+s_3_2488+s_3_2489+s_
3_2490+s_3_2491+s_3_2492+s_3_2493+s_3_2494+s_3_2495+s_3_2496+s_3_2497+s_3_2498 /
dev/shm/dayoa_bclconvert 650000000000
Submitted job 9 with external jobid '27'.

[Wed Jun  3 06:30:01 2026]
rule run_bclconvert_tile_shard:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fs
x/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6sh
ard_i192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleSheet.csv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/000
1_tiles0001-0131/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z
/tile_fastqs/L003/0001_tiles0001-0131/Reports/fastq_list.csv, /fsx/run_dir_mount
s/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_
devshm_argfix_20260603T0620Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/Demult
iplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from
_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L00
3/0001_tiles0001-0131/SampleSheet.csv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.L003
.0001_tiles0001-0131.log
    jobid: 4
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/benchmarks/run_bcl
convert.L003.0001_tiles0001-0131.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z
/tile_reports/L003/0001_tiles0001-0131/bclconvert.done, /fsx/run_dir_mounts/2026
0514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm
_argfix_20260603T0620Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/fastq_list.c
sv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l
003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0001_tiles00
01-0131/Reports/Demultiplex_Stats.csv; Input files updated by another job: /fsx/
run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shar
d_i192bigmem_devshm_argfix_20260603T0620Z/logs/validated.ok, /fsx/run_dir_mounts
/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_d
evshm_argfix_20260603T0620Z/normalized.SampleSheet.csv
    wildcards: lane=L003, shard=0001_tiles0001-0131
    threads: 192
    resources: mem_mb=1200000, mem_mib=1144410, disk_mb=1000, disk_mib=954, tmpd
ir=<TBD>, threads=192, time=5440, partition=i192bigmem, vcpu=192, distribution=b
lock, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm/dayoa_bclconvert_tmp bash workflow/scripts/run_bclconvert_lane.s
h docker://nfcore/bclconvert:4.0.3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_fastqs/L003/0001_til
es0001-0131 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/normalized.SampleShee
t.csv 3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0001_ti
les0001-0131/SampleSheet.csv false false false 1 24 4 64 32 false true 1000 '{"B
arcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' __dayoa_no_f
orce__ 192 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/logs/run_bclconvert.L0
03.0001_tiles0001-0131.log /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_f
astqs/L003/0001_tiles0001-0131/Reports/fastq_list.csv /fsx/run_dir_mounts/202605
14_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_a
rgfix_20260603T0620Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/Demultiplex_St
ats.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_6shard_i192bigmem_devshm_argfix_20260603T0620Z/tile_reports/L003/0001_ti
les0001-0131/bclconvert.done s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_11
06+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1
115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_
1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3
_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_
3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s
_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+
s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168
+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_117
7+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_11
86+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1
195+s_3_1196+s_3_1197+s_3_1198+s_3_1201+s_3_1202+s_3_1203+s_3_1204+s_3_1205+s_3_
1206+s_3_1207+s_3_1208+s_3_1209+s_3_1210+s_3_1211+s_3_1212+s_3_1213+s_3_1214+s_3
_1215+s_3_1216+s_3_1217+s_3_1218+s_3_1219+s_3_1220+s_3_1221+s_3_1222+s_3_1223+s_
3_1224+s_3_1225+s_3_1226+s_3_1227+s_3_1228+s_3_1229+s_3_1230+s_3_1231+s_3_1232+s
_3_1233 /dev/shm/dayoa_bclconvert 650000000000
Submitted job 4 with external jobid '28'.

__SQUEUE_AFTER_SEND__
             JOBID    PARTITION                                               NAME    STATE       TIME      NODES NODELIST(REASON)
                23   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0003 CONFIGUR       0:01          1 i192bigmem-dy-all-1
                24   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0005  PENDING       0:00          1 (Resources)
                25   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0002  PENDING       0:00          1 (Resources)
                26   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0004  PENDING       0:00          1 (Resources)
                27   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0006  PENDING       0:00          1 (Resources)
                28   i192bigmem run_bclconvert_tile_shard-run_bclconvert_L003_0001  PENDING       0:00          1 (Resources)

