DAY-EC activated.
COMMAND_ID=055b0239-6ada-440d-8041-077a4faf14fc
DAY-EC activated.
DAY-EC activated.
timestamp_utc	2026-06-03T06:53:12Z

== squeue ==
JOBID|PARTITION|NAME|STATE|TIME|NODES|CPUS|MIN_MEMORY|NODELIST(REASON)

== sinfo ==
PARTITION|AVAIL|TIMELIMIT|NODES|STATE|NODELIST|AVAIL_FEATURES|GRES
i192bigmem|up|infinite|1|idle|i192bigmem-dy-all-1|dynamic,all|(null)
bcl2fq|up|infinite|4|idle~|bcl2fq-dy-nvme48-[1-4]|dynamic,nvme48|(null)
bcl2fq|up|infinite|4|idle~|bcl2fq-dy-nvme64-[1-4]|dynamic,i4i.16xlarge,nvme64|(null)
bcl2fq|up|infinite|4|idle~|bcl2fq-dy-nvme96-[1-4]|dynamic,nvme96|(null)
bcl2fq|up|infinite|4|idle~|bcl2fq-dy-nvme128-[1-4]|dynamic,i4i.32xlarge,nvme128|(null)

== tmux tail ==
    cluster_jobid: 44

Error executing rule run_bclconvert_tile_shard on cluster (jobid: 7, external: 4
4, jobscript: /fsx/analysis_results/dyec0602bcl/bcl_l003_6shard_i192bigmem_devsh
m_emptydirfix_20260603T0642Z/daylily-omics-analysis/.snakemake/tmp.q2c5pk4n/snak
ejob.run_bclconvert_tile_shard.7.sh). For error details see the cluster log and
the log files of the involved rule(s).
[Wed Jun  3 06:51:13 2026]
Error in rule run_bclconvert_tile_shard:
    jobid: 9
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/validated.ok
, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l00
3_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/normalized.SampleSheet.csv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L00
3/0006_tiles0655-0784/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009
_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_2026
0603T0642Z/tile_fastqs/L003/0006_tiles0655-0784/Reports/fastq_list.csv, /fsx/run
_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i
192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0006_tiles0655-0784
/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVL
GLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T06
42Z/tile_reports/L003/0006_tiles0655-0784/SampleSheet.csv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert
.L003.0006_tiles0655-0784.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm/dayoa_bclconvert_tmp bash workflow/scripts/run_bclconver
t_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/run_dir_mounts/20260514_LH01106_
0009_B23TVLGLT4 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/
L003/0006_tiles0655-0784 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fa
sts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/nor
malized.SampleSheet.csv 3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/f
asts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/ti
le_reports/L003/0006_tiles0655-0784/SampleSheet.csv false false false 1 24 4 64
32 false true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2":
"0"}' '{}' __dayoa_no_force__ 192 /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T
0642Z/logs/run_bclconvert.L003.0006_tiles0655-0784.log /fsx/run_dir_mounts/20260
514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_
emptydirfix_20260603T0642Z/tile_fastqs/L003/0006_tiles0655-0784/Reports/fastq_li
st.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconver
t_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0006
_tiles0655-0784/Reports/Demultiplex_Stats.csv /fsx/run_dir_mounts/20260514_LH011
06_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirf
ix_20260603T0642Z/tile_reports/L003/0006_tiles0655-0784/bclconvert.done s_3_2367
+s_3_2368+s_3_2369+s_3_2370+s_3_2371+s_3_2372+s_3_2373+s_3_2374+s_3_2375+s_3_237
6+s_3_2377+s_3_2378+s_3_2379+s_3_2380+s_3_2381+s_3_2382+s_3_2383+s_3_2384+s_3_23
85+s_3_2386+s_3_2387+s_3_2388+s_3_2389+s_3_2390+s_3_2391+s_3_2392+s_3_2393+s_3_2
394+s_3_2395+s_3_2396+s_3_2397+s_3_2398+s_3_2401+s_3_2402+s_3_2403+s_3_2404+s_3_
2405+s_3_2406+s_3_2407+s_3_2408+s_3_2409+s_3_2410+s_3_2411+s_3_2412+s_3_2413+s_3
_2414+s_3_2415+s_3_2416+s_3_2417+s_3_2418+s_3_2419+s_3_2420+s_3_2421+s_3_2422+s_
3_2423+s_3_2424+s_3_2425+s_3_2426+s_3_2427+s_3_2428+s_3_2429+s_3_2430+s_3_2431+s
_3_2432+s_3_2433+s_3_2434+s_3_2435+s_3_2436+s_3_2437+s_3_2438+s_3_2439+s_3_2440+
s_3_2441+s_3_2442+s_3_2443+s_3_2444+s_3_2445+s_3_2446+s_3_2447+s_3_2448+s_3_2449
+s_3_2450+s_3_2451+s_3_2452+s_3_2453+s_3_2454+s_3_2455+s_3_2456+s_3_2457+s_3_245
8+s_3_2459+s_3_2460+s_3_2461+s_3_2462+s_3_2463+s_3_2464+s_3_2465+s_3_2466+s_3_24
67+s_3_2468+s_3_2469+s_3_2470+s_3_2471+s_3_2472+s_3_2473+s_3_2474+s_3_2475+s_3_2
476+s_3_2477+s_3_2478+s_3_2479+s_3_2480+s_3_2481+s_3_2482+s_3_2483+s_3_2484+s_3_
2485+s_3_2486+s_3_2487+s_3_2488+s_3_2489+s_3_2490+s_3_2491+s_3_2492+s_3_2493+s_3
_2494+s_3_2495+s_3_2496+s_3_2497+s_3_2498 /dev/shm/dayoa_bclconvert 650000000000
        (one of the commands exited with non-zero exit code; note that snakemake
 uses bash strict mode!)
    cluster_jobid: 45

Error executing rule run_bclconvert_tile_shard on cluster (jobid: 9, external: 4
5, jobscript: /fsx/analysis_results/dyec0602bcl/bcl_l003_6shard_i192bigmem_devsh
m_emptydirfix_20260603T0642Z/daylily-omics-analysis/.snakemake/tmp.q2c5pk4n/snak
ejob.run_bclconvert_tile_shard.9.sh). For error details see the cluster log and
the log files of the involved rule(s).
[Wed Jun  3 06:51:13 2026]
Error in rule run_bclconvert_tile_shard:
    jobid: 4
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/validated.ok
, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l00
3_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/normalized.SampleSheet.csv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L00
3/0001_tiles0001-0131/bclconvert.done, /fsx/run_dir_mounts/20260514_LH01106_0009
_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_2026
0603T0642Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/fastq_list.csv, /fsx/run
_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i
192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0001_tiles0001-0131
/Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVL
GLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T06
42Z/tile_reports/L003/0001_tiles0001-0131/SampleSheet.csv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert
.L003.0001_tiles0001-0131.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm/dayoa_bclconvert_tmp bash workflow/scripts/run_bclconver
t_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/run_dir_mounts/20260514_LH01106_
0009_B23TVLGLT4 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/
L003/0001_tiles0001-0131 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fa
sts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/nor
malized.SampleSheet.csv 3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/f
asts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/ti
le_reports/L003/0001_tiles0001-0131/SampleSheet.csv false false false 1 24 4 64
32 false true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2":
"0"}' '{}' __dayoa_no_force__ 192 /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T
0642Z/logs/run_bclconvert.L003.0001_tiles0001-0131.log /fsx/run_dir_mounts/20260
514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_
emptydirfix_20260603T0642Z/tile_fastqs/L003/0001_tiles0001-0131/Reports/fastq_li
st.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconver
t_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0001
_tiles0001-0131/Reports/Demultiplex_Stats.csv /fsx/run_dir_mounts/20260514_LH011
06_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirf
ix_20260603T0642Z/tile_reports/L003/0001_tiles0001-0131/bclconvert.done s_3_1101
+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_111
0+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_11
19+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1
128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_
1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3
_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_
3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s
_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+
s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181
+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_119
0+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198+s_3_12
01+s_3_1202+s_3_1203+s_3_1204+s_3_1205+s_3_1206+s_3_1207+s_3_1208+s_3_1209+s_3_1
210+s_3_1211+s_3_1212+s_3_1213+s_3_1214+s_3_1215+s_3_1216+s_3_1217+s_3_1218+s_3_
1219+s_3_1220+s_3_1221+s_3_1222+s_3_1223+s_3_1224+s_3_1225+s_3_1226+s_3_1227+s_3
_1228+s_3_1229+s_3_1230+s_3_1231+s_3_1232+s_3_1233 /dev/shm/dayoa_bclconvert 650
000000000
        (one of the commands exited with non-zero exit code; note that snakemake
 uses bash strict mode!)
    cluster_jobid: 46

Error executing rule run_bclconvert_tile_shard on cluster (jobid: 4, external: 4
6, jobscript: /fsx/analysis_results/dyec0602bcl/bcl_l003_6shard_i192bigmem_devsh
m_emptydirfix_20260603T0642Z/daylily-omics-analysis/.snakemake/tmp.q2c5pk4n/snak
ejob.run_bclconvert_tile_shard.4.sh). For error details see the cluster log and
the log files of the involved rule(s).
Exiting because a job execution failed. Look above for error message

        Womp Womp.  something went awry----
RETURN CODE: 1
__LIVE_EMPTYDIRFIX_EXIT__=1
[Dslu](DAYOA)

== controller processes ==

== dest counts ==
fastq_count	0
done_count	0
fastq_list_count	0
bench_count	1

== bcl log signals ==
2026-06-03T06:43:21.0000000000 259 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/bclconvert_validate_inputs.log
2026-06-03T06:43:21.0000000000 259 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/bclconvert_validate_inputs.warnings.log
2026-06-03T06:43:22.0000000000 0 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/validated.ok
2026-06-03T06:50:35.0000000000 9299 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0003_tiles0263-0393.log
2026-06-03T06:50:42.0000000000 9281 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0005_tiles0525-0654.log
2026-06-03T06:50:50.0000000000 9299 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0002_tiles0132-0262.log
2026-06-03T06:50:57.0000000000 9299 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0004_tiles0394-0524.log
2026-06-03T06:51:04.0000000000 9281 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0006_tiles0655-0784.log
2026-06-03T06:51:12.0000000000 9299 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0001_tiles0001-0131.log
--- /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0001_tiles0001-0131.log
1:scratch_available_bytes: 1278242455552
2:scratch_available_bytes_min: 650000000000
9:scratch_available_bytes_min: 650000000000
10:run_output_dir: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_46/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0001_tiles0001-0131/output
11:final_output_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0001_tiles0001-0131
37:bcl-convert command: singularity exec --bind /fsx:/fsx --bind /dev/shm/dayoa_bclconvert:/dev/shm/dayoa_bclconvert docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 --output-directory /dev/shm/dayoa_bclconvert/dayoa_bclconvert_46/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0001_tiles0001-0131/output --sample-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L003/0001_tiles0001-0131/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 24 --bcl-num-conversion-threads 4 --bcl-num-compression-threads 64 --bcl-num-decompression-threads 32 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198+s_3_1201+s_3_1202+s_3_1203+s_3_1204+s_3_1205+s_3_1206+s_3_1207+s_3_1208+s_3_1209+s_3_1210+s_3_1211+s_3_1212+s_3_1213+s_3_1214+s_3_1215+s_3_1216+s_3_1217+s_3_1218+s_3_1219+s_3_1220+s_3_1221+s_3_1222+s_3_1223+s_3_1224+s_3_1225+s_3_1226+s_3_1227+s_3_1228+s_3_1229+s_3_1230+s_3_1231+s_3_1232+s_3_1233
39:ERROR: Output folder should not exist before run: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_46/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0001_tiles0001-0131/output (use '--force' to override)
--- /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0002_tiles0132-0262.log
1:scratch_available_bytes: 1278242455552
2:scratch_available_bytes_min: 650000000000
9:scratch_available_bytes_min: 650000000000
10:run_output_dir: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_43/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0002_tiles0132-0262/output
11:final_output_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0002_tiles0132-0262
37:bcl-convert command: singularity exec --bind /fsx:/fsx --bind /dev/shm/dayoa_bclconvert:/dev/shm/dayoa_bclconvert docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 --output-directory /dev/shm/dayoa_bclconvert/dayoa_bclconvert_43/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0002_tiles0132-0262/output --sample-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L003/0002_tiles0132-0262/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 24 --bcl-num-conversion-threads 4 --bcl-num-compression-threads 64 --bcl-num-decompression-threads 32 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1234+s_3_1235+s_3_1236+s_3_1237+s_3_1238+s_3_1239+s_3_1240+s_3_1241+s_3_1242+s_3_1243+s_3_1244+s_3_1245+s_3_1246+s_3_1247+s_3_1248+s_3_1249+s_3_1250+s_3_1251+s_3_1252+s_3_1253+s_3_1254+s_3_1255+s_3_1256+s_3_1257+s_3_1258+s_3_1259+s_3_1260+s_3_1261+s_3_1262+s_3_1263+s_3_1264+s_3_1265+s_3_1266+s_3_1267+s_3_1268+s_3_1269+s_3_1270+s_3_1271+s_3_1272+s_3_1273+s_3_1274+s_3_1275+s_3_1276+s_3_1277+s_3_1278+s_3_1279+s_3_1280+s_3_1281+s_3_1282+s_3_1283+s_3_1284+s_3_1285+s_3_1286+s_3_1287+s_3_1288+s_3_1289+s_3_1290+s_3_1291+s_3_1292+s_3_1293+s_3_1294+s_3_1295+s_3_1296+s_3_1297+s_3_1298+s_3_1301+s_3_1302+s_3_1303+s_3_1304+s_3_1305+s_3_1306+s_3_1307+s_3_1308+s_3_1309+s_3_1310+s_3_1311+s_3_1312+s_3_1313+s_3_1314+s_3_1315+s_3_1316+s_3_1317+s_3_1318+s_3_1319+s_3_1320+s_3_1321+s_3_1322+s_3_1323+s_3_1324+s_3_1325+s_3_1326+s_3_1327+s_3_1328+s_3_1329+s_3_1330+s_3_1331+s_3_1332+s_3_1333+s_3_1334+s_3_1335+s_3_1336+s_3_1337+s_3_1338+s_3_1339+s_3_1340+s_3_1341+s_3_1342+s_3_1343+s_3_1344+s_3_1345+s_3_1346+s_3_1347+s_3_1348+s_3_1349+s_3_1350+s_3_1351+s_3_1352+s_3_1353+s_3_1354+s_3_1355+s_3_1356+s_3_1357+s_3_1358+s_3_1359+s_3_1360+s_3_1361+s_3_1362+s_3_1363+s_3_1364+s_3_1365+s_3_1366
39:ERROR: Output folder should not exist before run: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_43/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0002_tiles0132-0262/output (use '--force' to override)
--- /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0003_tiles0263-0393.log
1:scratch_available_bytes: 1278242455552
2:scratch_available_bytes_min: 650000000000
9:scratch_available_bytes_min: 650000000000
10:run_output_dir: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_41/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0003_tiles0263-0393/output
11:final_output_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0003_tiles0263-0393
37:bcl-convert command: singularity exec --bind /fsx:/fsx --bind /dev/shm/dayoa_bclconvert:/dev/shm/dayoa_bclconvert docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 --output-directory /dev/shm/dayoa_bclconvert/dayoa_bclconvert_41/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0003_tiles0263-0393/output --sample-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L003/0003_tiles0263-0393/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 24 --bcl-num-conversion-threads 4 --bcl-num-compression-threads 64 --bcl-num-decompression-threads 32 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1367+s_3_1368+s_3_1369+s_3_1370+s_3_1371+s_3_1372+s_3_1373+s_3_1374+s_3_1375+s_3_1376+s_3_1377+s_3_1378+s_3_1379+s_3_1380+s_3_1381+s_3_1382+s_3_1383+s_3_1384+s_3_1385+s_3_1386+s_3_1387+s_3_1388+s_3_1389+s_3_1390+s_3_1391+s_3_1392+s_3_1393+s_3_1394+s_3_1395+s_3_1396+s_3_1397+s_3_1398+s_3_1401+s_3_1402+s_3_1403+s_3_1404+s_3_1405+s_3_1406+s_3_1407+s_3_1408+s_3_1409+s_3_1410+s_3_1411+s_3_1412+s_3_1413+s_3_1414+s_3_1415+s_3_1416+s_3_1417+s_3_1418+s_3_1419+s_3_1420+s_3_1421+s_3_1422+s_3_1423+s_3_1424+s_3_1425+s_3_1426+s_3_1427+s_3_1428+s_3_1429+s_3_1430+s_3_1431+s_3_1432+s_3_1433+s_3_1434+s_3_1435+s_3_1436+s_3_1437+s_3_1438+s_3_1439+s_3_1440+s_3_1441+s_3_1442+s_3_1443+s_3_1444+s_3_1445+s_3_1446+s_3_1447+s_3_1448+s_3_1449+s_3_1450+s_3_1451+s_3_1452+s_3_1453+s_3_1454+s_3_1455+s_3_1456+s_3_1457+s_3_1458+s_3_1459+s_3_1460+s_3_1461+s_3_1462+s_3_1463+s_3_1464+s_3_1465+s_3_1466+s_3_1467+s_3_1468+s_3_1469+s_3_1470+s_3_1471+s_3_1472+s_3_1473+s_3_1474+s_3_1475+s_3_1476+s_3_1477+s_3_1478+s_3_1479+s_3_1480+s_3_1481+s_3_1482+s_3_1483+s_3_1484+s_3_1485+s_3_1486+s_3_1487+s_3_1488+s_3_1489+s_3_1490+s_3_1491+s_3_1492+s_3_1493+s_3_1494+s_3_1495+s_3_1496+s_3_1497+s_3_1498+s_3_2101
39:ERROR: Output folder should not exist before run: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_41/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0003_tiles0263-0393/output (use '--force' to override)
--- /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/logs/run_bclconvert.L003.0004_tiles0394-0524.log
1:scratch_available_bytes: 1278242455552
2:scratch_available_bytes_min: 650000000000
9:scratch_available_bytes_min: 650000000000
10:run_output_dir: /dev/shm/dayoa_bclconvert/dayoa_bclconvert_44/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0004_tiles0394-0524/output
11:final_output_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_fastqs/L003/0004_tiles0394-0524
37:bcl-convert command: singularity exec --bind /fsx:/fsx --bind /dev/shm/dayoa_bclconvert:/dev/shm/dayoa_bclconvert docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 --output-directory /dev/shm/dayoa_bclconvert/dayoa_bclconvert_44/fsx_run_dir_mounts_20260514_LH01106_0009_B23TVLGLT4_fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z_tile_fastqs_L003_0004_tiles0394-0524/output --sample-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/tile_reports/L003/0004_tiles0394-0524/SampleSheet.csv --strict-mode false --first-tile-only f--output truncated--
