COMPUTATIONAL BIOLOGY LABORATORY

CAMSA report

Per assembly overview

ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP
A1 scaffmatch 188 188 / 0 / 0 178 10 / 0 0 / 0 185 (98.40 %)
A2 sga 124 124 / 0 / 0 120 4 / 0 0 / 0 121 (97.58 %)
A3 soap2 187 187 / 0 / 0 177 10 / 0 0 / 0 185 (98.93 %)
A4 sspace 187 187 / 0 / 0 179 8 / 0 0 / 0 186 (99.47 %)
ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP

Individual assemblies


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30 62 + + O 0 0 0 0 0 1
187 42 - - O 0 0 0 0 0 1
100 66 + + O 0 0 0 0 0 1
192 55 + + O 0 0 0 0 0 1
109 44 + + O 0 0 0 0 0 1
145 28 - - O 0 0 0 0 0 1
124 126 + + O 0 0 0 0 0 1
116 9 + + O 0 0 0 0 0 1
159 170 + + O 0 0 0 0 0 1
111 58 - - O 0 0 0 0 0 1
131 43 - - O 0 0 0 0 0 1
118 71 - - O 0 0 0 0 0 1
154 99 - - O 0 0 0 0 0 1
169 172 - - O 0 0 0 0 0 1
116 74 - - O 0 0 0 0 0 1
195 61 + + O 0 0 0 0 0 1
102 153 - - O 0 0 0 0 0 1
110 63 + + O 0 0 0 0 0 1
107 47 + + O 0 0 0 0 0 1
134 37 + + O 0 0 0 0 0 1
18 33 + + O 0 0 0 0 0 1
120 76 + + O 0 0 0 0 0 1
17 53 - - O 0 0 0 0 0 1
106 76 - - O 0 0 0 0 0 1
11 29 + + O 0 0 0 0 0 1
82 94 - - O 0 0 0 0 0 1
178 204 + + O 0 0 0 0 0 1
15 2 + + O 0 0 0 0 0 1
163 185 + + O 0 0 0 0 0 1
81 91 + + O 0 0 0 0 0 1
62 70 + + O 0 0 0 0 0 1
167 168 + + O 0 0 0 0 0 1
67 69 + + O 0 0 0 0 0 1
203 60 + + O 0 0 0 0 0 1
121 184 - - O 0 0 0 0 0 1
195 24 - - O 0 0 0 0 0 1
121 151 + + O 0 0 0 0 0 1
196 87 - - O 0 0 0 0 0 1
41 8 - - O 0 0 0 0 0 1
136 72 + + O 0 0 0 0 0 1
20 207 + + O 0 0 0 0 0 1
156 171 + + O 0 0 0 0 0 1
108 135 - - O 0 0 0 0 0 1
171 192 + + O 0 0 0 0 0 1
146 4 - - O 0 0 0 1 0 1
14 145 - - O 0 0 0 0 0 1
108 150 + + O 0 0 0 0 0 1
136 68 - - O 0 0 0 0 0 1
149 7 + + O 0 0 0 0 0 1
147 92 + + O 0 0 0 0 0 1
13 38 + + O 0 0 0 0 0 1
138 78 + + O 0 0 0 0 0 1
128 53 + + O 0 0 0 0 0 1
194 98 - - O 0 0 0 0 0 1
162 168 + - O 0 0 0 0 0 1
15 92 - - O 0 0 0 0 0 1
64 89 + + O 0 0 0 0 0 1
137 183 - - O 0 0 0 0 0 1
103 73 - - O 0 0 0 0 0 1
13 157 - - O 0 0 0 0 0 1
182 39 - - O 0 0 0 0 0 1
113 19 + + O 0 0 0 1 0 1
161 5 + - O 0 0 0 0 1 1
20 84 - - O 0 0 0 0 0 1
65 77 - - O 0 0 0 0 0 1
147 79 - - O 0 0 0 0 0 1
57 59 - - O 0 0 0 0 0 1
128 72 - - O 0 0 0 0 0 1
22 98 + + O 0 0 0 0 0 1
139 25 - - O 0 0 0 0 0 1
113 193 - - O 0 0 0 0 0 1
133 183 + + O 0 0 0 0 0 1
102 42 + + O 0 0 0 0 0 1
107 201 - - O 0 0 0 0 0 1
141 23 - - O 0 0 0 0 0 1
110 61 - - O 0 0 0 0 0 1
202 24 + + O 0 0 0 0 0 1
120 2 - - O 0 0 0 0 0 1
139 178 + + O 0 0 0 0 0 1
45 95 - - O 0 0 0 0 0 1
32 84 + + O 0 0 0 0 0 1
164 175 + + O 0 0 0 0 0 1
46 90 + + O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Aggregated assembly points

[ scaffmatch; sga; soap2; sspace ]


Fragment length filtration is not available, as no data regarding fragments length was provided


Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id
[A1, A2, A3, A4] 129 96 + + + + + + 4.0 O 0 0 0 0 1 m_0
[A1, A2, A3, A4] 117 34 - - - - - - 4.0 O 0 0 0 0 1 m_1
[A1, A2, A3, A4] 165 86 - - - - - - 4.0 O 0 0 0 0 1 m_2
[A1, A2, A3, A4] 101 27 + + + + + + 4.0 O 0 0 0 0 1 m_3
[A1, A3, A4] 169 185 + - + - + - 3.0 O 0 0 0 0 1 m_4
[A1, A2, A3, A4] 198 69 - - - - - - 4.0 O 0 0 0 0 1 m_5
[A1, A4] 167 172 - + - + - + 2.0 O 0 0 0 0 1 m_6
[A1, A3, A4] 131 205 + + + + + + 3.0 O 0 0 0 0 1 m_7
[A1, A2, A3, A4] 28 55 - - - - - - 4.0 O 0 0 0 0 1 m_8
[A2, A3, A4] 188 201 + + + + + + 3.0 O 0 0 0 0 1 m_9
[A1, A2, A3, A4] 199 35 + + + + + + 4.0 O 0 0 0 0 1 m_10
[A1, A2, A3, A4] 12 49 + + + + + + 4.0 O 0 0 0 0 1 m_11
[A1, A2, A3, A4] 133 27 - - - - - - 4.0 O 0 0 0 0 1 m_12
[A1, A3, A4] 140 75 - - - - - - 3.0 O 0 0 0 0 1 m_13
[A1, A2, A3, A4] 197 25 + + + + + + 4.0 O 0 0 0 0 1 m_14
[A1, A2, A3] 48 49 + - + - + - 3.0 O 0 0 0 [A4] 1 m_15
[A1, A4] 21 43 + + + + + + 2.0 O 0 0 0 0 1 m_16
[A1, A3, A4] 29 64 + + + + + + 3.0 O 0 0 0 0 1 m_17
[A1, A2, A3, A4] 165 81 + + + + + + 4.0 O 0 0 0 0 1 m_18
[A1, A3, A4] 109 148 - - - - - - 3.0 O 0 0 0 0 1 m_19
[A1, A2, A3, A4] 12 31 - - - - - - 4.0 O 0 0 0 0 1 m_20
[A1, A3, A4] 22 88 - - - - - - 3.0 O 0 0 0 0 1 m_21
[A1, A2, A3, A4] 39 89 - - - - - - 4.0 O 0 0 0 0 1 m_22
[A4] 0 16 + + + + + + 1.0 O 0 0 0 [A3] 1 m_23
[A1, A3, A4] 180 19 - - - - - - 3.0 O 0 0 0 0 1 m_24
[A1, A2, A3, A4] 101 91 - - - - - - 4.0 O 0 0 0 0 1 m_25
[A1, A3, A4] 38 73 + + + + + + 3.0 O 0 0 0 0 1 m_26
[A1, A2, A3, A4] 202 207 - - - - - - 4.0 O 0 0 0 0 1 m_27
[A1, A2, A3, A4] 119 54 + + + + + + 4.0 O 0 0 0 0 1 m_28
[A1, A2, A3, A4] 186 79 + + + + + + 4.0 O 0 0 0 0 1 m_29
[A1, A2, A3, A4] 132 143 - - - - - - 4.0 O 0 0 0 0 1 m_30
[A1, A2, A3, A4] 9 97 + + + + + + 4.0 O 0 0 0 0 1 m_31
[A1, A2, A3, A4] 105 17 - - - - - - 4.0 O 0 0 0 0 1 m_32
[A1, A2, A3, A4] 104 44 - - - - - - 4.0 O 0 0 0 0 1 m_33
[A1, A2, A3, A4] 114 115 + + + + + + 4.0 O 0 0 0 0 1 m_34
[A1] 158 166 + - + - + - 1.0 O 0 0 0 0 1 m_35
[A2] 143 90 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_36
[A1, A3, A4] 186 85 - - - - - - 3.0 O 0 0 0 0 1 m_37
[A1, A2, A3, A4] 132 75 + + + + + + 4.0 O 0 0 0 0 1 m_38
[A1, A3, A4] 6 90 - - - - - - 3.0 O 0 0 0 [A2] 1 m_39
[A1, A2, A3, A4] 152 155 + + + + + + 4.0 O 0 0 0 0 1 m_40
[A1, A3, A4] 194 26 + + + + + + 3.0 O 0 0 0 0 1 m_41
[A1] 112 19 - + None None - + 1.0 O 0 0 0 [A3, A4] 0 m_42
[A1, A2, A3, A4] 170 181 + + + + + + 4.0 O 0 0 0 0 1 m_43
[A1, A2, A3, A4] 153 70 - - - - - - 4.0 O 0 0 0 0 1 m_44
[A1, A2, A3, A4] 197 63 - - - - - - 4.0 O 0 0 0 0 1 m_45
[A1, A3] 127 164 + + None None + + 2.0 O 0 0 0 0 0 m_46
[A1, A2, A3, A4] 138 154 - - - - - - 4.0 O 0 0 0 0 1 m_47
[A1, A3, A4] 47 8 + + + + + + 3.0 O 0 0 0 0 1 m_48
[A1, A2, A3, A4] 179 54 - - - - - - 4.0 O 0 0 0 0 1 m_49
[A1, A3, A4] 191 86 + + + + + + 3.0 O 0 0 0 0 1 m_50
[A1, A2, A3, A4] 190 59 + + + + + + 4.0 O 0 0 0 0 1 m_51
[A1, A3, A4] 140 31 + + + + + + 3.0 O 0 0 0 0 1 m_52
[A2, A3, A4] 159 163 - + - + - + 3.0 O 0 0 0 0 1 m_53
[A1, A2, A3, A4] 51 77 + + + + + + 4.0 O 0 0 0 0 1 m_54
[A1, A2, A3, A4] 67 83 - - - - - - 4.0 O 0 0 0 0 1 m_55
[A1, A3, A4] 106 148 + + + + + + 3.0 O 0 0 0 0 1 m_56
[A1, A2, A3, A4] 156 196 - - - - - - 4.0 O 0 0 0 0 1 m_57
[A1, A2, A3, A4] 103 87 + + + + + + 4.0 O 0 0 0 0 1 m_58
[A1, A2, A3, A4] 11 180 - - - - - - 4.0 O 0 0 0 0 1 m_59
[A1, A2, A3, A4] 179 95 + + + + + + 4.0 O 0 0 0 0 1 m_60
[A1, A3, A4] 143 6 - - - - - - 3.0 O 0 0 0 [A2] 1 m_61
[A1, A2, A3, A4] 124 146 - - - - - - 4.0 O 0 0 0 0 1 m_62
[A4] 161 176 - - - - - - 1.0 O 0 0 0 0 1 m_63
[A1, A2, A3, A4] 104 36 + + + + + + 4.0 O 0 0 0 0 1 m_64
[A4] 0 205 - - - - - - 1.0 O 0 0 0 [A3] 1 m_65
[A1, A2, A3, A4] 182 30 + + + + + + 4.0 O 0 0 0 0 1 m_66
[A1, A3, A4] 37 80 + + + + + + 3.0 O 0 0 0 0 1 m_67
[A1, A2, A3, A4] 119 97 - - - - - - 4.0 O 0 0 0 0 1 m_68
[A1, A2, A3, A4] 100 118 - - - - - - 4.0 O 0 0 0 0 1 m_69
[A1, A3, A4] 189 60 - - - - - - 3.0 O 0 0 0 0 1 m_70
[A1, A3, A4] 162 175 - - - - - - 3.0 O 0 0 0 0 1 m_71
[A1, A2, A3, A4] 198 23 + + + + + + 4.0 O 0 0 0 0 1 m_72
[A1, A2, A3, A4] 157 33 - - - - - - 4.0 O 0 0 0 0 1 m_73
[A1, A2, A3, A4] 129 35 - - - - - - 4.0 O 0 0 0 0 1 m_74
[A1, A2, A3, A4] 46 65 - - - - - - 4.0 O 0 0 0 0 1 m_75
[A1, A2, A3, A4] 130 190 + + + + + + 4.0 O 0 0 0 0 1 m_76
[A1] 158 160 - + - + - + 1.0 O 0 0 0 0 1 m_77
[A1, A2, A3, A4] 26 32 + + + + + + 4.0 O 0 0 0 0 1 m_78
[A1, A3, A4] 126 188 + + + + + + 3.0 O 0 0 0 0 1 m_79
[A1, A2, A3, A4] 111 40 + + + + + + 4.0 O 0 0 0 0 1 m_80
[A1, A3, A4] 193 40 - - - - - - 3.0 O 0 0 0 0 1 m_81
[A1, A2, A3, A4] 52 94 + + + + + + 4.0 O 0 0 0 0 1 m_82
[A1, A2, A3, A4] 141 93 + + + + + + 4.0 O 0 0 0 0 1 m_83
[A1, A2, A3, A4] 80 99 + + + + + + 4.0 O 0 0 0 0 1 m_84
[A1, A3] 18 48 - + - + - + 2.0 O 0 0 0 [A4] 1 m_85
[A4] 18 49 - - None None - - 1.0 O 0 0 0 [A1, A2, A3] 0 m_86
[A1] 200 21 + + + + + + 1.0 O 0 0 0 0 1 m_87
[A1, A2, A3, A4] 130 144 - - - - - - 4.0 O 0 0 0 0 1 m_88
[A1, A2, A3, A4] 34 57 - - - - - - 4.0 O 0 0 0 0 1 m_89
[A1, A3, A4] 68 7 - - - - - - 3.0 O 0 0 0 0 1 m_90
[A1, A3, A4] 144 189 - - - - - - 3.0 O 0 0 0 0 1 m_91
[A1, A2, A3, A4] 137 83 + + + + + + 4.0 O 0 0 0 0 1 m_92
[A1, A2, A3, A4] 88 93 - - - - - - 4.0 O 0 0 0 0 1 m_93
[A1, A2, A3, A4] 114 45 - - - - - - 4.0 O 0 0 0 0 1 m_94
[A1, A2, A3, A4] 203 78 - - - - - - 4.0 O 0 0 0 0 1 m_95
[A1, A3, A4] 4 82 - - - - - - 3.0 O 0 0 0 [A2] 1 m_96
[A1, A3, A4] 149 155 - - - - - - 3.0 O 0 0 0 0 1 m_97
[A3, A4] 16 176 + + + + + + 2.0 O 0 0 0 0 1 m_98
[A1, A2, A3, A4] 115 177 + + + + + + 4.0 O 0 0 0 0 1 m_99
[A1, A3, A4] 151 85 + + + + + + 3.0 O 0 0 0 0 1 m_100
[A1, A2, A3, A4] 199 56 - - - - - - 4.0 O 0 0 0 0 1 m_101
[A1, A3, A4] 134 66 - - - - - - 3.0 O 0 0 0 0 1 m_102
[A1, A2, A3, A4] 36 51 + + + + + + 4.0 O 0 0 0 0 1 m_103
[A1, A2, A3, A4] 41 56 + + + + + + 4.0 O 0 0 0 0 1 m_104
[A1, A3, A4] 127 181 - - - - - - 3.0 O 0 0 0 0 1 m_105
[A1, A3, A4] 117 74 + + + + + + 3.0 O 0 0 0 0 1 m_106
[A1, A2, A3, A4] 58 96 - - - - - - 4.0 O 0 0 0 0 1 m_107
[A3, A4] 173 174 + + + + + + 2.0 O 0 0 0 0 1 m_108
[A1, A2, A3, A4] 14 152 + + + + + + 4.0 O 0 0 0 0 1 m_109
[A1, A2, A3, A4] 105 142 + + + + + + 4.0 O 0 0 0 0 1 m_110
[A1, A2, A3, A4] 177 52 + + + + + + 4.0 O 0 0 0 0 1 m_111
[A1, A2, A3, A4] 30 62 + + + + + + 4.0 O 0 0 0 0 1 m_112
[A1, A3, A4] 187 42 - - - - - - 3.0 O 0 0 0 0 1 m_113
[A1, A3] 142 3 + + + + + + 2.0 O 0 0 0 [A2] 1 m_114
[A3] 16 205 - - None None - - 1.0 O 0 0 0 [A4] 0 m_115
[A1, A3, A4] 100 66 + + + + + + 3.0 O 0 0 0 0 1 m_116
[A1, A3, A4] 192 55 + + + + + + 3.0 O 0 0 0 0 1 m_117
[A1, A2, A3, A4] 109 44 + + + + + + 4.0 O 0 0 0 0 1 m_118
[A1, A2, A3, A4] 145 28 - - - - - - 4.0 O 0 0 0 0 1 m_119
[A1, A2, A3, A4] 124 126 + + + + + + 4.0 O 0 0 0 0 1 m_120
[A1, A2, A3, A4] 116 9 + + + + + + 4.0 O 0 0 0 0 1 m_121
[A1, A2, A3, A4] 159 170 + + + + + + 4.0 O 0 0 0 0 1 m_122
[A1, A2, A3, A4] 111 58 - - - - - - 4.0 O 0 0 0 0 1 m_123
[A1, A3, A4] 131 43 - - - - - - 3.0 O 0 0 0 0 1 m_124
[A1, A2, A3, A4] 118 71 - - - - - - 4.0 O 0 0 0 0 1 m_125
[A1, A2, A3, A4] 154 99 - - - - - - 4.0 O 0 0 0 0 1 m_126
[A1, A3, A4] 169 172 - - - - - - 3.0 O 0 0 0 0 1 m_127
[A1, A3, A4] 116 74 - - - - - - 3.0 O 0 0 0 0 1 m_128
[A1, A3, A4] 195 61 + + + + + + 3.0 O 0 0 0 0 1 m_129
[A1, A2, A3, A4] 102 153 - - - - - - 4.0 O 0 0 0 0 1 m_130
[A1, A2, A3, A4] 110 63 + + + + + + 4.0 O 0 0 0 0 1 m_131
[A1, A3, A4] 107 47 + + + + + + 3.0 O 0 0 0 0 1 m_132
[A1, A3, A4] 134 37 + + + + + + 3.0 O 0 0 0 0 1 m_133
[A1, A3, A4] 18 33 + + + + + + 3.0 O 0 0 0 0 1 m_134
[A1, A2, A3, A4] 120 76 + + + + + + 4.0 O 0 0 0 0 1 m_135
[A1, A2, A3, A4] 17 53 - - - - - - 4.0 O 0 0 0 0 1 m_136
[A1, A2, A3, A4] 106 76 - - - - - - 4.0 O 0 0 0 0 1 m_137
[A1, A3, A4] 11 29 + + + + + + 3.0 O 0 0 0 0 1 m_138
[A1, A2, A3, A4] 82 94 - - - - - - 4.0 O 0 0 0 0 1 m_139
[A1, A2, A3, A4] 178 204 + + + + + + 4.0 O 0 0 0 0 1 m_140
[A1, A2, A3, A4] 15 2 + + + + + + 4.0 O 0 0 0 0 1 m_141
[A1, A2, A3, A4] 163 185 + + + + + + 4.0 O 0 0 0 0 1 m_142
[A1, A2, A3, A4] 81 91 + + + + + + 4.0 O 0 0 0 0 1 m_143
[A1, A2, A3, A4] 62 70 + + + + + + 4.0 O 0 0 0 0 1 m_144
[A1, A3, A4] 167 168 + + + + + + 3.0 O 0 0 0 0 1 m_145
[A1, A2, A3, A4] 67 69 + + + + + + 4.0 O 0 0 0 0 1 m_146
[A1, A2, A3, A4] 203 60 + + + + + + 4.0 O 0 0 0 0 1 m_147
[A1, A3, A4] 121 184 - - - - - - 3.0 O 0 0 0 0 1 m_148
[A1, A3, A4] 195 24 - - - - - - 3.0 O 0 0 0 0 1 m_149
[A1, A2, A3, A4] 121 151 + + + + + + 4.0 O 0 0 0 0 1 m_150
[A1, A2, A3, A4] 196 87 - - - - - - 4.0 O 0 0 0 0 1 m_151
[A1, A3, A4] 41 8 - - - - - - 3.0 O 0 0 0 0 1 m_152
[A1, A2, A3, A4] 136 72 + + + + + + 4.0 O 0 0 0 0 1 m_153
[A1, A2, A3, A4] 20 207 + + + + + + 4.0 O 0 0 0 0 1 m_154
[A1, A2, A3, A4] 156 171 + + + + + + 4.0 O 0 0 0 0 1 m_155
[A1, A2, A3, A4] 108 135 - - - - - - 4.0 O 0 0 0 0 1 m_156
[A1, A3, A4] 171 192 + + + + + + 3.0 O 0 0 0 0 1 m_157
[A1, A3, A4] 146 4 - - - - - - 3.0 O 0 0 0 [A2] 1 m_158
[A1, A2, A3, A4] 14 145 - - - - - - 4.0 O 0 0 0 0 1 m_159
[A1, A2, A3, A4] 108 150 + + + + + + 4.0 O 0 0 0 0 1 m_160
[A1, A2, A3, A4] 136 68 - - - - - - 4.0 O 0 0 0 0 1 m_161
[A1, A3, A4] 149 7 + + + + + + 3.0 O 0 0 0 0 1 m_162
[A1, A2, A3, A4] 147 92 + + + + + + 4.0 O 0 0 0 0 1 m_163
[A1, A3, A4] 13 38 + + + + + + 3.0 O 0 0 0 0 1 m_164
[A1, A2, A3, A4] 138 78 + + + + + + 4.0 O 0 0 0 0 1 m_165
[A1, A2, A3] 10 71 + + + + + + 3.0 O 0 0 0 0 1 m_166
[A1, A3, A4] 128 53 + + + + + + 3.0 O 0 0 0 0 1 m_167
[A1, A3, A4] 194 98 - - - - - - 3.0 O 0 0 0 0 1 m_168
[A1] 112 113 + - None None + - 1.0 O 0 0 0 [A3, A4] 0 m_169
[A1, A2, A3, A4] 162 168 + - + - + - 4.0 O 0 0 0 0 1 m_170
[A1, A2, A3, A4] 15 92 - - - - - - 4.0 O 0 0 0 0 1 m_171
[A1, A2, A3, A4] 64 89 + + + + + + 4.0 O 0 0 0 0 1 m_172
[A1, A2, A3, A4] 137 183 - - - - - - 4.0 O 0 0 0 0 1 m_173
[A1, A2, A3, A4] 103 73 - - - - - - 4.0 O 0 0 0 0 1 m_174
[A1, A2, A3, A4] 13 157 - - - - - - 4.0 O 0 0 0 0 1 m_175
[A1, A2, A3, A4] 182 39 - - - - - - 4.0 O 0 0 0 0 1 m_176
[A1, A3] 10 3 - - - - - - 2.0 O 0 0 0 [A2] 1 m_177
[A2] 10 142 - - None None - - 1.0 O 0 0 0 [A1, A3] 0 m_178
[A3, A4] 113 19 + + + + + + 2.0 O 0 0 0 [A1] 1 m_179
[A4] 161 5 + - + - + - 1.0 O 0 0 0 0 1 m_180
[A1, A2, A3, A4] 20 84 - - - - - - 4.0 O 0 0 0 0 1 m_181
[A1, A2, A3, A4] 65 77 - - - - - - 4.0 O 0 0 0 0 1 m_182
[A1, A2, A3, A4] 147 79 - - - - - - 4.0 O 0 0 0 0 1 m_183
[A1, A2, A3, A4] 57 59 - - - - - - 4.0 O 0 0 0 0 1 m_184
[A1, A3, A4] 128 72 - - - - - - 3.0 O 0 0 0 0 1 m_185
[A1, A3, A4] 22 98 + + + + + + 3.0 O 0 0 0 0 1 m_186
[A1, A3, A4] 139 25 - - - - - - 3.0 O 0 0 0 0 1 m_187
[A1, A3, A4] 113 193 - - - - - - 3.0 O 0 0 0 0 1 m_188
[A1, A2, A3, A4] 133 183 + + + + + + 4.0 O 0 0 0 0 1 m_189
[A1, A2, A3, A4] 102 42 + + + + + + 4.0 O 0 0 0 0 1 m_190
[A1, A3, A4] 107 201 - - - - - - 3.0 O 0 0 0 0 1 m_191
[A1, A2, A3, A4] 141 23 - - - - - - 4.0 O 0 0 0 0 1 m_192
[A2] 146 82 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_193
[A1, A2, A3, A4] 110 61 - - - - - - 4.0 O 0 0 0 0 1 m_194
[A1, A3, A4] 202 24 + + + + + + 3.0 O 0 0 0 0 1 m_195
[A1, A2, A3, A4] 120 2 - - - - - - 4.0 O 0 0 0 0 1 m_196
[A1, A3, A4] 139 178 + + + + + + 3.0 O 0 0 0 0 1 m_197
[A1, A2, A3, A4] 45 95 - - - - - - 4.0 O 0 0 0 0 1 m_198
[A1, A2, A3, A4] 32 84 + + + + + + 4.0 O 0 0 0 0 1 m_199
[A1, A3, A4] 164 175 + + + + + + 3.0 O 0 0 0 0 1 m_200
[A1, A2, A3, A4] 46 90 + + + + + + 4.0 O 0 0 0 0 1 m_201
Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id

How to interpret column values

  • Sources: column represents the list of assemblies, that reported a particular assembly point. Assemblies are referred to by there ids, which in turn can be found in Assemblies summary table, as well as next to each assembly in the Individual assemblies section
  • Seq1: column corresponds to first, out of two fragments, that participate in the reported assembly point.
  • Seq2: column corresponds to second, out of two fragments, that participate in the reported assembly point
  • Or1: column corresponds to relative orientation of Seq1 wrt Seq2 in the reported assembly.
    1. + orientation corresponds to the head of Seq1 being adjacent in the reported assembly
    2. - orientation corresponds to the tail of Seq1 being adjacent in the reported assembly
  • Or2: column corresponds to relative orientation of Seq2 wrt Seq1 in the reported assembly.
    1. + orientation corresponds to the tail of Seq2 being adjacent in the reported assembly
    2. - orientation corresponds to the head of Seq2 being adjacent in the reported assembly
  • CW: confidence weight (score) for the reported assembly point. Equals to the sum of assembly points's scores, reported by each source
  • Or: a flag determining the class of the assembly point:
    1. O: oriented assembly point, that is for both fragments their extremities are specified
    2. SO: semi-oriented assembly point, that is only for one out of two fragments an assembly extremity is specified
    3. U: unoriented assembly point, that is for both fragments their extremities used for assembly are not specified
  • ISC: corresponds to the list of sources, with which this assembly point is In-SemiConflicted. This is the case, when the assembly point (by some, but not all of its realizations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they both come from same source.
    0 is specified if no in-semiconflicts were identified for this point.
  • IC: corresponds to the list of sources, with which this assembly point is In-Conflicted. This is the case, if the assembly point (by all of its realizations), is conflicted with some other assembly point (by all of later one's realizations), and they both come from the same source.
    0 is specified if no in-conflicts were identified for this point.
  • OSC: corresponds to the list of sources, with which this assembly point is Out-SemiConflicted. This is the case, when the assembly point (by some, but not all of its representations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • OC: corresponds to the list of sources, with which this assembly point is Out-Conflicted. This is the case, when the assembly point (by all of its representations) is conflicted with some other assembly point (with all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • MAP: is a flag (i.e. either 0 or 1) corresponding to whether this assembly point participates in the reported Merged-Assembly.

How to filter and order information in the table

  • Built-in filters: every column has a filter in the table heading.
    1. If the filter is represented an input field, then the smart Datatables search is used.
    2. If the input is represented with a dropdown, then all rows with values matching the chosen value will be kept.
    3. There is a table-wide filter on the top right of the table. Again the smart search is used, but in this case it is table-wide, not column specific.
  • Advanced filtering: There is a panel with advance filtering capabilities. Please refer to instructions in it.
Built-in and advanced filters can be combined together. The only difference is that build in filters revert filtering changes on-the-fly, once the filter criteria is removed, while for advanced filtering has to be manually reverted, with the "Remove all filters button".

using layout

Filter the table and draw the first graph


Reading the graph


Coloring

A1
A2
A3
A4

Edges

  • Scaffold edge: is a directed black edge with scaffold name written on it. Represents the scaffold, participating in one or more assembly points. Direction of the edge corresponds to its relative orientation.
    Example:

  • Assembly edge: colored (based on the source assembly) undirected edge corresponding to the reported assembly point.
    • Candidate: all assembly edges from un/semi-oriented assembly points are shown as dashed.
      Example:

    • Exact: all assembly edges from orientedassembly points are shown as solid.
      Example:

    If the edge is shown in bold, it means that the assembly point (its particular realization , corresponding to the egde), participates in the produced merged assembly.
    Example:


    Parallel assembly edges of several colors correspond to assembly points' representations, where the colors determine the list of source assemblies.
    Example:

Modifying the graph

  • Zooming: using the scroll of the mouse, one can zoom in and out of the graph. Note that the position of the pointer determines where the zoom will be focused.
  • Moving: use the standard drag operation to move the graph
  • Fitting: to fit the whole drawn graph in the frame, use the Fit button at the top of the picture

Saving graph image

Using the Save button on the top of the graph image itself, one can save the current view of the graph as a png picture.

Dr. Max A. Alekseyev: maxal@gwu.edu

The project is supported by the National Science Foundation under Grant No. IIS-1462107.

2016