COMPUTATIONAL BIOLOGY LABORATORY

CAMSA report

Per assembly overview

ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP
A1 scaffmatch 53 53 / 0 / 0 48 5 / 0 0 / 0 51 (96.23 %)
A2 sga 43 43 / 0 / 0 40 3 / 0 0 / 0 42 (97.67 %)
A3 soap2 54 54 / 0 / 0 49 5 / 0 0 / 0 52 (96.30 %)
A4 sspace 51 51 / 0 / 0 48 3 / 0 0 / 0 49 (96.08 %)
ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP

Individual assemblies


Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
contig_23 contig_4 + + O 0 0 0 0 0 1
contig_56 contig_57 + + O 0 0 0 0 0 1
contig_39 contig_42 - - O 0 0 0 0 0 1
contig_43 contig_44 - - O 0 0 0 0 0 1
contig_42 contig_58 - - O 0 0 0 0 0 1
contig_16 contig_17 + + O 0 0 0 1 0 1
contig_38 contig_60 + + O 0 0 0 0 0 1
contig_54 contig_59 + + O 0 0 0 0 0 1
contig_1 contig_56 + + O 0 0 0 0 0 1
contig_17 contig_55 + + O 0 0 0 1 1 0
contig_36 contig_60 - - O 0 0 0 0 0 1
contig_13 contig_26 + + O 0 0 0 0 0 1
contig_2 contig_21 - - O 0 0 0 0 0 1
contig_16 contig_51 - - O 0 0 0 0 0 1
contig_0 contig_5 - - O 0 0 0 0 0 1
contig_29 contig_58 + + O 0 0 0 0 0 1
contig_15 contig_66 + + O 0 0 0 0 0 1
contig_21 contig_22 - - O 0 0 0 0 0 1
contig_12 contig_27 - - O 0 0 0 0 0 1
contig_2 contig_5 + + O 0 0 0 0 0 1
contig_43 contig_46 + + O 0 0 0 0 0 1
contig_35 contig_37 + + O 0 0 0 0 0 1
contig_53 contig_8 - - O 0 0 0 0 0 1
contig_19 contig_7 + + O 0 0 0 0 0 1
contig_48 contig_63 + + O 0 0 0 0 0 1
contig_30 contig_53 - - O 0 0 0 0 0 1
contig_46 contig_47 + + O 0 0 0 0 0 1
contig_14 contig_62 + + O 0 0 0 0 0 1
contig_25 contig_26 - - O 0 0 0 0 0 1
contig_32 contig_34 + + O 0 0 0 0 0 1
contig_55 contig_64 + + O 0 0 0 1 1 0
contig_20 contig_27 + + O 0 0 0 0 0 1
contig_25 contig_65 + + O 0 0 0 0 0 1
contig_23 contig_40 - - O 0 0 0 0 0 1
contig_20 contig_65 - - O 0 0 0 0 0 1
contig_33 contig_59 - - O 0 0 0 0 0 1
contig_7 contig_8 + + O 0 0 0 0 0 1
contig_13 contig_3 - - O 0 0 0 0 0 1
contig_36 contig_61 + + O 0 0 0 0 0 1
contig_1 contig_50 - - O 0 0 0 0 0 1
contig_15 contig_49 - - O 0 0 0 0 0 1
contig_18 contig_4 - - O 0 0 0 0 0 1
contig_3 contig_34 - - O 0 0 0 0 0 1
contig_40 contig_66 - - O 0 0 0 0 0 1
contig_35 contig_39 - - O 0 0 0 1 0 1
contig_18 contig_19 + + O 0 0 0 0 0 1
contig_32 contig_33 - - O 0 0 0 0 0 1
contig_12 contig_22 + + O 0 0 0 0 0 1
contig_54 contig_64 - - O 0 0 0 0 0 1
contig_0 contig_48 + + O 0 0 0 0 0 1
contig_41 contig_61 - - O 0 0 0 0 0 1
contig_37 contig_38 + + O 0 0 0 1 0 1
contig_29 contig_30 - - O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
contig_23 contig_4 + + O 0 0 0 0 0 1
contig_56 contig_57 + + O 0 0 0 0 0 1
contig_42 contig_58 - - O 0 0 0 0 0 1
contig_16 contig_17 + + O 0 0 0 1 0 1
contig_54 contig_59 + + O 0 0 0 0 0 1
contig_1 contig_56 + + O 0 0 0 0 0 1
contig_36 contig_60 - - O 0 0 0 0 0 1
contig_13 contig_26 + + O 0 0 0 0 0 1
contig_2 contig_21 - - O 0 0 0 0 0 1
contig_16 contig_51 - - O 0 0 0 0 0 1
contig_0 contig_5 - - O 0 0 0 0 0 1
contig_15 contig_66 + + O 0 0 0 0 0 1
contig_21 contig_22 - - O 0 0 0 0 0 1
contig_12 contig_27 - - O 0 0 0 0 0 1
contig_2 contig_5 + + O 0 0 0 0 0 1
contig_53 contig_8 - - O 0 0 0 0 0 1
contig_19 contig_7 + + O 0 0 0 0 0 1
contig_48 contig_63 + + O 0 0 0 0 0 1
contig_30 contig_53 - - O 0 0 0 0 0 1
contig_14 contig_62 + + O 0 0 0 0 0 1
contig_25 contig_26 - - O 0 0 0 0 0 1
contig_32 contig_34 + + O 0 0 0 0 0 1
contig_20 contig_27 + + O 0 0 0 0 0 1
contig_25 contig_65 + + O 0 0 0 0 0 1
contig_17 contig_64 + + O 0 0 0 1 0 1
contig_23 contig_40 - - O 0 0 0 0 0 1
contig_20 contig_65 - - O 0 0 0 0 0 1
contig_33 contig_59 - - O 0 0 0 0 0 1
contig_7 contig_8 + + O 0 0 0 0 0 1
contig_13 contig_3 - - O 0 0 0 0 0 1
contig_36 contig_61 + + O 0 0 0 0 0 1
contig_1 contig_50 - - O 0 0 0 0 0 1
contig_15 contig_49 - - O 0 0 0 0 0 1
contig_18 contig_4 - - O 0 0 0 0 0 1
contig_3 contig_34 - - O 0 0 0 0 0 1
contig_38 contig_39 - - O 0 0 0 1 0 0
contig_40 contig_66 - - O 0 0 0 0 0 1
contig_18 contig_19 + + O 0 0 0 0 0 1
contig_32 contig_33 - - O 0 0 0 0 0 1
contig_12 contig_22 + + O 0 0 0 0 0 1
contig_54 contig_64 - - O 0 0 0 0 0 1
contig_0 contig_48 + + O 0 0 0 0 0 1
contig_41 contig_61 - - O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
contig_17 contig_55 - - O 0 0 0 1 1 0
contig_23 contig_4 + + O 0 0 0 0 0 1
contig_56 contig_57 + + O 0 0 0 0 0 1
contig_39 contig_42 - - O 0 0 0 0 0 1
contig_43 contig_44 - - O 0 0 0 0 0 1
contig_42 contig_58 - - O 0 0 0 0 0 1
contig_38 contig_60 + + O 0 0 0 0 0 1
contig_54 contig_59 + + O 0 0 0 0 0 1
contig_1 contig_56 + + O 0 0 0 0 0 1
contig_16 contig_55 + + O 0 0 0 1 1 0
contig_36 contig_60 - - O 0 0 0 0 0 1
contig_13 contig_26 + + O 0 0 0 0 0 1
contig_2 contig_21 - - O 0 0 0 0 0 1
contig_16 contig_51 - - O 0 0 0 0 0 1
contig_0 contig_5 - - O 0 0 0 0 0 1
contig_29 contig_58 + + O 0 0 0 0 0 1
contig_15 contig_66 + + O 0 0 0 0 0 1
contig_21 contig_22 - - O 0 0 0 0 0 1
contig_12 contig_27 - - O 0 0 0 0 0 1
contig_2 contig_5 + + O 0 0 0 0 0 1
contig_43 contig_46 + + O 0 0 0 0 0 1
contig_35 contig_37 + + O 0 0 0 0 0 1
contig_53 contig_8 - - O 0 0 0 0 0 1
contig_19 contig_7 + + O 0 0 0 0 0 1
contig_48 contig_63 + + O 0 0 0 0 0 1
contig_30 contig_53 - - O 0 0 0 0 0 1
contig_46 contig_47 + + O 0 0 0 0 0 1
contig_14 contig_62 + + O 0 0 0 0 0 1
contig_25 contig_26 - - O 0 0 0 0 0 1
contig_32 contig_34 + + O 0 0 0 0 0 1
contig_20 contig_27 + + O 0 0 0 0 0 1
contig_25 contig_65 + + O 0 0 0 0 0 1
contig_44 contig_45 - - O 0 0 0 0 1 1
contig_17 contig_64 + + O 0 0 0 1 0 1
contig_23 contig_40 - - O 0 0 0 0 0 1
contig_20 contig_65 - - O 0 0 0 0 0 1
contig_33 contig_59 - - O 0 0 0 0 0 1
contig_7 contig_8 + + O 0 0 0 0 0 1
contig_13 contig_3 - - O 0 0 0 0 0 1
contig_36 contig_61 + + O 0 0 0 0 0 1
contig_1 contig_50 - - O 0 0 0 0 0 1
contig_15 contig_49 - - O 0 0 0 0 0 1
contig_18 contig_4 - - O 0 0 0 0 0 1
contig_3 contig_34 - - O 0 0 0 0 0 1
contig_40 contig_66 - - O 0 0 0 0 0 1
contig_35 contig_39 - - O 0 0 0 1 0 1
contig_18 contig_19 + + O 0 0 0 0 0 1
contig_32 contig_33 - - O 0 0 0 0 0 1
contig_12 contig_22 + + O 0 0 0 0 0 1
contig_54 contig_64 - - O 0 0 0 0 0 1
contig_0 contig_48 + + O 0 0 0 0 0 1
contig_41 contig_61 - - O 0 0 0 0 0 1
contig_37 contig_38 + + O 0 0 0 1 0 1
contig_29 contig_30 - - O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
contig_23 contig_4 + + O 0 0 0 0 0 1
contig_56 contig_57 + + O 0 0 0 0 0 1
contig_39 contig_42 - - O 0 0 0 0 0 1
contig_43 contig_44 - - O 0 0 0 0 0 1
contig_42 contig_58 - - O 0 0 0 0 0 1
contig_16 contig_17 + + O 0 0 0 1 0 1
contig_38 contig_60 + + O 0 0 0 0 0 1
contig_54 contig_59 + + O 0 0 0 0 0 1
contig_1 contig_56 + + O 0 0 0 0 0 1
contig_36 contig_60 - - O 0 0 0 0 0 1
contig_13 contig_26 + + O 0 0 0 0 0 1
contig_2 contig_21 - - O 0 0 0 0 0 1
contig_16 contig_51 - - O 0 0 0 0 0 1
contig_0 contig_5 - - O 0 0 0 0 0 1
contig_29 contig_58 + + O 0 0 0 0 0 1
contig_15 contig_66 + + O 0 0 0 0 0 1
contig_21 contig_22 - - O 0 0 0 0 0 1
contig_12 contig_27 - - O 0 0 0 0 0 1
contig_2 contig_5 + + O 0 0 0 0 0 1
contig_43 contig_46 + + O 0 0 0 0 0 1
contig_53 contig_8 - - O 0 0 0 0 0 1
contig_19 contig_7 + + O 0 0 0 0 0 1
contig_48 contig_63 + + O 0 0 0 0 0 1
contig_30 contig_53 - - O 0 0 0 0 0 1
contig_46 contig_47 + + O 0 0 0 0 0 1
contig_14 contig_62 + + O 0 0 0 0 0 1
contig_25 contig_26 - - O 0 0 0 0 0 1
contig_32 contig_34 + + O 0 0 0 0 0 1
contig_20 contig_27 + + O 0 0 0 0 0 1
contig_25 contig_65 + + O 0 0 0 0 0 1
contig_45 contig_47 - - O 0 0 0 0 1 0
contig_17 contig_64 + + O 0 0 0 1 0 1
contig_23 contig_40 - - O 0 0 0 0 0 1
contig_20 contig_65 - - O 0 0 0 0 0 1
contig_33 contig_59 - - O 0 0 0 0 0 1
contig_7 contig_8 + + O 0 0 0 0 0 1
contig_13 contig_3 - - O 0 0 0 0 0 1
contig_36 contig_61 + + O 0 0 0 0 0 1
contig_1 contig_50 - - O 0 0 0 0 0 1
contig_15 contig_49 - - O 0 0 0 0 0 1
contig_18 contig_4 - - O 0 0 0 0 0 1
contig_3 contig_34 - - O 0 0 0 0 0 1
contig_38 contig_39 - - O 0 0 0 1 0 0
contig_40 contig_66 - - O 0 0 0 0 0 1
contig_18 contig_19 + + O 0 0 0 0 0 1
contig_32 contig_33 - - O 0 0 0 0 0 1
contig_12 contig_22 + + O 0 0 0 0 0 1
contig_54 contig_64 - - O 0 0 0 0 0 1
contig_0 contig_48 + + O 0 0 0 0 0 1
contig_41 contig_61 - - O 0 0 0 0 0 1
contig_29 contig_30 - - O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Aggregated assembly points

[ scaffmatch (A1); sga (A2); soap2 (A3); sspace (A4) ]


Fragment length filtration is not available, as no data regarding fragments length was provided


Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id
[A3] contig_17 contig_55 - - None None - - 1.0 O 0 0 0 [A1, A2, A4] 0 m_0
[A1, A2, A3, A4] contig_23 contig_4 + + + + + + 4.0 O 0 0 0 0 1 m_1
[A1, A2, A3, A4] contig_56 contig_57 + + + + + + 4.0 O 0 0 0 0 1 m_2
[A1, A3, A4] contig_39 contig_42 - - - - - - 3.0 O 0 0 0 0 1 m_3
[A1, A3, A4] contig_43 contig_44 - - - - - - 3.0 O 0 0 0 0 1 m_4
[A1, A2, A3, A4] contig_42 contig_58 - - - - - - 4.0 O 0 0 0 0 1 m_5
[A1, A2, A4] contig_16 contig_17 + + + + + + 3.0 O 0 0 0 [A3] 1 m_6
[A1, A3, A4] contig_38 contig_60 + + + + + + 3.0 O 0 0 0 0 1 m_7
[A1, A2, A3, A4] contig_54 contig_59 + + + + + + 4.0 O 0 0 0 0 1 m_8
[A1, A2, A3, A4] contig_1 contig_56 + + + + + + 4.0 O 0 0 0 0 1 m_9
[A3] contig_16 contig_55 + + None None + + 1.0 O 0 0 0 [A1, A2, A4] 0 m_10
[A1] contig_17 contig_55 + + None None + + 1.0 O 0 0 0 [A2, A3, A4] 0 m_11
[A1, A2, A3, A4] contig_36 contig_60 - - - - - - 4.0 O 0 0 0 0 1 m_12
[A1, A2, A3, A4] contig_13 contig_26 + + + + + + 4.0 O 0 0 0 0 1 m_13
[A1, A2, A3, A4] contig_2 contig_21 - - - - - - 4.0 O 0 0 0 0 1 m_14
[A1, A2, A3, A4] contig_16 contig_51 - - - - - - 4.0 O 0 0 0 0 1 m_15
[A1, A2, A3, A4] contig_0 contig_5 - - - - - - 4.0 O 0 0 0 0 1 m_16
[A1, A3, A4] contig_29 contig_58 + + + + + + 3.0 O 0 0 0 0 1 m_17
[A1, A2, A3, A4] contig_15 contig_66 + + + + + + 4.0 O 0 0 0 0 1 m_18
[A1, A2, A3, A4] contig_21 contig_22 - - - - - - 4.0 O 0 0 0 0 1 m_19
[A1, A2, A3, A4] contig_12 contig_27 - - - - - - 4.0 O 0 0 0 0 1 m_20
[A1, A2, A3, A4] contig_2 contig_5 + + + + + + 4.0 O 0 0 0 0 1 m_21
[A1, A3, A4] contig_43 contig_46 + + + + + + 3.0 O 0 0 0 0 1 m_22
[A1, A3] contig_35 contig_37 + + + + + + 2.0 O 0 0 0 0 1 m_23
[A1, A2, A3, A4] contig_53 contig_8 - - - - - - 4.0 O 0 0 0 0 1 m_24
[A1, A2, A3, A4] contig_19 contig_7 + + + + + + 4.0 O 0 0 0 0 1 m_25
[A1, A2, A3, A4] contig_48 contig_63 + + + + + + 4.0 O 0 0 0 0 1 m_26
[A1, A2, A3, A4] contig_30 contig_53 - - - - - - 4.0 O 0 0 0 0 1 m_27
[A1, A3, A4] contig_46 contig_47 + + + + + + 3.0 O 0 0 0 0 1 m_28
[A1, A2, A3, A4] contig_14 contig_62 + + + + + + 4.0 O 0 0 0 0 1 m_29
[A1, A2, A3, A4] contig_25 contig_26 - - - - - - 4.0 O 0 0 0 0 1 m_30
[A1, A2, A3, A4] contig_32 contig_34 + + + + + + 4.0 O 0 0 0 0 1 m_31
[A1] contig_55 contig_64 + + None None + + 1.0 O 0 0 0 [A2, A3, A4] 0 m_32
[A1, A2, A3, A4] contig_20 contig_27 + + + + + + 4.0 O 0 0 0 0 1 m_33
[A1, A2, A3, A4] contig_25 contig_65 + + + + + + 4.0 O 0 0 0 0 1 m_34
[A4] contig_45 contig_47 - - None None - - 1.0 O 0 0 0 0 0 m_35
[A3] contig_44 contig_45 - - - - - - 1.0 O 0 0 0 0 1 m_36
[A2, A3, A4] contig_17 contig_64 + + + + + + 3.0 O 0 0 0 [A1] 1 m_37
[A1, A2, A3, A4] contig_23 contig_40 - - - - - - 4.0 O 0 0 0 0 1 m_38
[A1, A2, A3, A4] contig_20 contig_65 - - - - - - 4.0 O 0 0 0 0 1 m_39
[A1, A2, A3, A4] contig_33 contig_59 - - - - - - 4.0 O 0 0 0 0 1 m_40
[A1, A2, A3, A4] contig_7 contig_8 + + + + + + 4.0 O 0 0 0 0 1 m_41
[A1, A2, A3, A4] contig_13 contig_3 - - - - - - 4.0 O 0 0 0 0 1 m_42
[A1, A2, A3, A4] contig_36 contig_61 + + + + + + 4.0 O 0 0 0 0 1 m_43
[A1, A2, A3, A4] contig_1 contig_50 - - - - - - 4.0 O 0 0 0 0 1 m_44
[A1, A2, A3, A4] contig_15 contig_49 - - - - - - 4.0 O 0 0 0 0 1 m_45
[A1, A2, A3, A4] contig_18 contig_4 - - - - - - 4.0 O 0 0 0 0 1 m_46
[A1, A2, A3, A4] contig_3 contig_34 - - - - - - 4.0 O 0 0 0 0 1 m_47
[A2, A4] contig_38 contig_39 - - None None - - 2.0 O 0 0 0 [A1, A3] 0 m_48
[A1, A2, A3, A4] contig_40 contig_66 - - - - - - 4.0 O 0 0 0 0 1 m_49
[A1, A3] contig_35 contig_39 - - - - - - 2.0 O 0 0 0 [A2, A4] 1 m_50
[A1, A2, A3, A4] contig_18 contig_19 + + + + + + 4.0 O 0 0 0 0 1 m_51
[A1, A2, A3, A4] contig_32 contig_33 - - - - - - 4.0 O 0 0 0 0 1 m_52
[A1, A2, A3, A4] contig_12 contig_22 + + + + + + 4.0 O 0 0 0 0 1 m_53
[A1, A2, A3, A4] contig_54 contig_64 - - - - - - 4.0 O 0 0 0 0 1 m_54
[A1, A2, A3, A4] contig_0 contig_48 + + + + + + 4.0 O 0 0 0 0 1 m_55
[A1, A2, A3, A4] contig_41 contig_61 - - - - - - 4.0 O 0 0 0 0 1 m_56
[A1, A3] contig_37 contig_38 + + + + + + 2.0 O 0 0 0 [A2, A4] 1 m_57
[A1, A3, A4] contig_29 contig_30 - - - - - - 3.0 O 0 0 0 0 1 m_58
Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id

How to interpret column values

  • Sources: column represents the list of assemblies, that reported a particular assembly point. Assemblies are referred to by there ids, which in turn can be found in Assemblies summary table, as well as next to each assembly in the Individual assemblies section
  • Seq1: column corresponds to first, out of two fragments, that participate in the reported assembly point.
  • Seq2: column corresponds to second, out of two fragments, that participate in the reported assembly point
  • Or1: column corresponds to relative orientation of Seq1 wrt Seq2 in the reported assembly.
    1. + orientation corresponds to the head of Seq1 being adjacent in the reported assembly
    2. - orientation corresponds to the tail of Seq1 being adjacent in the reported assembly
  • Or2: column corresponds to relative orientation of Seq2 wrt Seq1 in the reported assembly.
    1. + orientation corresponds to the tail of Seq2 being adjacent in the reported assembly
    2. - orientation corresponds to the head of Seq2 being adjacent in the reported assembly
  • CW: confidence weight (score) for the reported assembly point. Equals to the sum of assembly points's scores, reported by each source
  • Or: a flag determining the class of the assembly point:
    1. O: oriented assembly point, that is for both fragments their extremities are specified
    2. SO: semi-oriented assembly point, that is only for one out of two fragments an assembly extremity is specified
    3. U: unoriented assembly point, that is for both fragments their extremities used for assembly are not specified
  • ISC: corresponds to the list of sources, with which this assembly point is In-SemiConflicted. This is the case, when the assembly point (by some, but not all of its realizations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they both come from same source.
    0 is specified if no in-semiconflicts were identified for this point.
  • IC: corresponds to the list of sources, with which this assembly point is In-Conflicted. This is the case, if the assembly point (by all of its realizations), is conflicted with some other assembly point (by all of later one's realizations), and they both come from the same source.
    0 is specified if no in-conflicts were identified for this point.
  • OSC: corresponds to the list of sources, with which this assembly point is Out-SemiConflicted. This is the case, when the assembly point (by some, but not all of its representations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • OC: corresponds to the list of sources, with which this assembly point is Out-Conflicted. This is the case, when the assembly point (by all of its representations) is conflicted with some other assembly point (with all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • MAP: is a flag (i.e. either 0 or 1) corresponding to whether this assembly point participates in the reported Merged-Assembly.

How to filter and order information in the table

  • Built-in filters: every column has a filter in the table heading.
    1. If the filter is represented an input field, then the smart Datatables search is used.
    2. If the input is represented with a dropdown, then all rows with values matching the chosen value will be kept.
    3. There is a table-wide filter on the top right of the table. Again the smart search is used, but in this case it is table-wide, not column specific.
  • Advanced filtering: There is a panel with advance filtering capabilities. Please refer to instructions in it.
Built-in and advanced filters can be combined together. The only difference is that build in filters revert filtering changes on-the-fly, once the filter criteria is removed, while for advanced filtering has to be manually reverted, with the "Remove all filters button".

using layout

Filter the table and draw the first graph


Reading the graph


Coloring

A1
A2
A3
A4

Edges

  • Scaffold edge: is a directed black edge with scaffold name written on it. Represents the scaffold, participating in one or more assembly points. Direction of the edge corresponds to its relative orientation.
    Example:

  • Assembly edge: colored (based on the source assembly) undirected edge corresponding to the reported assembly point.
    • Candidate: all assembly edges from un/semi-oriented assembly points are shown as dashed.
      Example:

    • Exact: all assembly edges from orientedassembly points are shown as solid.
      Example:

    If the edge is shown in bold, it means that the assembly point (its particular realization , corresponding to the egde), participates in the produced merged assembly.
    Example:


    Parallel assembly edges of several colors correspond to assembly points' representations, where the colors determine the list of source assemblies.
    Example:

Modifying the graph

  • Zooming: using the scroll of the mouse, one can zoom in and out of the graph. Note that the position of the pointer determines where the zoom will be focused.
  • Moving: use the standard drag operation to move the graph
  • Fitting: to fit the whole drawn graph in the frame, use the Fit button at the top of the picture

Saving graph image

Using the Save button on the top of the graph image itself, one can save the current view of the graph as a png picture.

Dr. Max A. Alekseyev: maxal@gwu.edu

The project is supported by the National Science Foundation under Grant No. IIS-1462107.

2016