LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
examples/01_basic_kernel_matrix.ipynb
examples/02_distance_metrics_and_kernels.ipynb
examples/03_svc_with_kernel.ipynb
examples/04_clustering_sequences.ipynb
examples/05_score_long_sequence.ipynb
examples/06_weighted_kernel.ipynb
examples/07_transform_and_comparison.ipynb
examples/08_windowed_3d_tensors.ipynb
examples/09_spectrum_encoder_and_differential.ipynb
examples/10_gappy_encoder.ipynb
examples/11_mismatch_encoder.ipynb
examples/12_shuffler_and_chunker.ipynb
kmer/__init__.py
kmer/_common.h
kmer/distance/__init__.py
kmer/distance/_base.py
kmer/distance/alignment.py
kmer/distance/edit.py
kmer/encoders/__init__.py
kmer/encoders/gappy.py
kmer/encoders/mismatch.py
kmer/encoders/spectrum.py
kmer/encoders/_native/__init__.py
kmer/encoders/_native/_common.h
kmer/encoders/_native/_gappy.c
kmer/encoders/_native/_gappy_pylib.c
kmer/encoders/_native/_mismatch.c
kmer/encoders/_native/_mismatch_pylib.c
kmer/encoders/_native/_spectrum.c
kmer/encoders/_native/_spectrum_pylib.c
kmer/kernels/__init__.py
kmer/kernels/gkmkernel.py
kmer/kernels/_native/__init__.py
kmer/kernels/_native/_gkmkern_pylib.c
kmer/kernels/_native/gkmkern.c
kmer/kernels/_native/gkmkern.h
kmer/models/__init__.py
kmer/models/differential.py
kmer/models/knn.py
kmer/models/svm.py
kmer/perturb/__init__.py
kmer/perturb/_base.py
kmer/perturb/chunker.py
kmer/perturb/shuffler.py
kmer/perturb/_native/__init__.py
kmer/perturb/_native/_chunker.c
kmer/perturb/_native/_chunker_pylib.c
kmer/perturb/_native/_common.h
kmer/perturb/_native/_shuffler.c
kmer/perturb/_native/_shuffler_pylib.c
kmer/tests/__init__.py
kmer/tests/brute_force_reference.py
kmer/tests/test_background_model.py
kmer/tests/test_chunker.py
kmer/tests/test_differential.py
kmer/tests/test_distances.py
kmer/tests/test_encoders.py
kmer/tests/test_gkm_reference.py
kmer/tests/test_mismatch.py
kmer/tests/test_models.py
kmer/tests/test_shuffler.py
kmer/tests/gkm/__init__.py
kmer/tests/gkm/test_gkmkern.py
kmer/utils/__init__.py
kmer/utils/seq.py
kmer_learn.egg-info/PKG-INFO
kmer_learn.egg-info/SOURCES.txt
kmer_learn.egg-info/dependency_links.txt
kmer_learn.egg-info/requires.txt
kmer_learn.egg-info/top_level.txt