LICENSE
README.md
pyproject.toml
docs/architecture.md
docs/failure-policy.md
docs/host-integration.md
docs/public-demo.md
docs/research-operations-specification.md
docs/secure-harness.md
docs/security.md
docs/semantic-retrieval.md
docs/user-guide.md
docs/decisions/0001-canonical-authority.md
docs/decisions/0002-recoverable-ingest.md
docs/decisions/0003-supported-wheel-surface.md
docs/decisions/0004-content-anchored-evidence.md
packs/study_type/research_operations.yaml
plugin/universal-research-memory/.mcp.json
plugin/universal-research-memory/.codex-plugin/plugin.json
plugin/universal-research-memory/hooks/hooks.json
plugin/universal-research-memory/hooks/session-scope.md
plugin/universal-research-memory/scripts/session_start.py
plugin/universal-research-memory/skills/research-governance/SKILL.md
plugin/universal-research-memory/skills/research-governance/agents/openai.yaml
plugin/universal-research-memory/skills/research-workflow/SKILL.md
schemas/agent-runtime-event.schema.json
schemas/core-record.schema.json
schemas/governance-operation.schema.json
schemas/index-health.schema.json
schemas/pack-manifest.schema.json
schemas/project-profile.schema.json
schemas/research-agent-decision.schema.json
schemas/research-agent-task.schema.json
schemas/research-run-plan.schema.json
schemas/worker-result.schema.json
tests/test_agent_creation_gate.py
tests/test_build_research_ledger_index.py
tests/test_build_research_semantic_index.py
tests/test_cli_init_semantic_status.py
tests/test_codex_adapter.py
tests/test_codex_agent_control.py
tests/test_contract_files.py
tests/test_core_ledger.py
tests/test_framework_operations.py
tests/test_governance.py
tests/test_governance_v2.py
tests/test_integrity_claim_gate_benchmark.py
tests/test_integrity_claim_gate_fixtures.py
tests/test_lexical_index_foundation.py
tests/test_mcp_ingest.py
tests/test_memory_claim_gate.py
tests/test_public_demo_server.py
tests/test_public_distribution.py
tests/test_public_semantic_retrieval.py
tests/test_query_research_code.py
tests/test_research_memory_e2e.py
tests/test_research_memory_mcp.py
tests/test_research_memory_server.py
tests/test_research_profile.py
tests/test_role_prompt_packs.py
tests/test_secure_harness.py
tests/test_semantic_index_manager.py
tests/test_semantic_runtime.py
tests/test_semantic_setup.py
tests/test_stdio_transport.py
tests/test_unified_cli.py
tests/test_urag_governance.py
tests/test_urmcp_alias_distribution.py
tests/test_watch_research_index.py
universal_research_mcp/__init__.py
universal_research_mcp/__main__.py
universal_research_mcp/cli.py
universal_research_mcp/governance_server.py
universal_research_mcp/public_demo.py
universal_research_mcp/semantic_backends.py
universal_research_mcp/semantic_runtime.py
universal_research_mcp/server.py
universal_research_mcp/session_scope.py
universal_research_mcp.egg-info/PKG-INFO
universal_research_mcp.egg-info/SOURCES.txt
universal_research_mcp.egg-info/dependency_links.txt
universal_research_mcp.egg-info/entry_points.txt
universal_research_mcp.egg-info/requires.txt
universal_research_mcp.egg-info/top_level.txt
universal_research_mcp/adapters/__init__.py
universal_research_mcp/adapters/markdown_views.py
universal_research_mcp/core/__init__.py
universal_research_mcp/core/amendments.py
universal_research_mcp/core/audit.py
universal_research_mcp/core/canonical_io.py
universal_research_mcp/core/claim_gate.py
universal_research_mcp/core/governance.py
universal_research_mcp/core/index_refresh.py
universal_research_mcp/core/indexing.py
universal_research_mcp/core/ingest.py
universal_research_mcp/core/input.py
universal_research_mcp/core/ledger.py
universal_research_mcp/core/proposals.py
universal_research_mcp/core/redaction.py
universal_research_mcp/core/search.py
universal_research_mcp/core/usage.py
universal_research_mcp/governance/__init__.py
universal_research_mcp/governance/agent_creation.py
universal_research_mcp/governance/batch.py
universal_research_mcp/governance/cli.py
universal_research_mcp/governance/errors.py
universal_research_mcp/governance/escalation.py
universal_research_mcp/governance/failure_policy.py
universal_research_mcp/governance/hashing.py
universal_research_mcp/governance/prompts.py
universal_research_mcp/governance/registry.py
universal_research_mcp/governance/scope_policy.py
universal_research_mcp/governance/validation.py
universal_research_mcp/governance/workflow.py
universal_research_mcp/governance/roles/analysis_objectivity_auditor/instructions.md
universal_research_mcp/governance/roles/analysis_objectivity_auditor/role.yaml
universal_research_mcp/governance/roles/benchmark_control_auditor/instructions.md
universal_research_mcp/governance/roles/benchmark_control_auditor/role.yaml
universal_research_mcp/governance/roles/cold_adversarial_reviewer/instructions.md
universal_research_mcp/governance/roles/cold_adversarial_reviewer/role.yaml
universal_research_mcp/governance/roles/correction_executor/instructions.md
universal_research_mcp/governance/roles/correction_executor/role.yaml
universal_research_mcp/governance/roles/paper_evidence_evaluator/instructions.md
universal_research_mcp/governance/roles/paper_evidence_evaluator/role.yaml
universal_research_mcp/governance/roles/reproducibility_reviewer/instructions.md
universal_research_mcp/governance/roles/reproducibility_reviewer/role.yaml
universal_research_mcp/governance/roles/research_memory_maintainer/instructions.md
universal_research_mcp/governance/roles/research_memory_maintainer/role.yaml
universal_research_mcp/governance/roles/retrieval_governor/instructions.md
universal_research_mcp/governance/roles/retrieval_governor/role.yaml
universal_research_mcp/governance/roles/scope_and_cost_governor/instructions.md
universal_research_mcp/governance/roles/scope_and_cost_governor/role.yaml
universal_research_mcp/governance/roles/substance_reviewer/instructions.md
universal_research_mcp/governance/roles/substance_reviewer/role.yaml
universal_research_mcp/governance/roles/user_alignment_reviewer/instructions.md
universal_research_mcp/governance/roles/user_alignment_reviewer/role.yaml
universal_research_mcp/governance/schemas/prompt-pack.schema.json
universal_research_mcp/governance/schemas/role-manifest.schema.json
universal_research_mcp/indexing/__init__.py
universal_research_mcp/indexing/lexical.py
universal_research_mcp/indexing/semantic.py
universal_research_mcp/integrations/__init__.py
universal_research_mcp/integrations/codex/__init__.py
universal_research_mcp/integrations/codex/adapter.py
universal_research_mcp/integrations/codex/agent_control.py
universal_research_mcp/runtime/__init__.py
universal_research_mcp/runtime/agent_approval.py
universal_research_mcp/runtime/ingest_approval.py
universal_research_mcp/runtime/model_snapshot.py
universal_research_mcp/runtime/paths.py
universal_research_mcp/runtime/project_io.py
universal_research_mcp/runtime/research_profile.py
universal_research_mcp/runtime/semantic_config.py
universal_research_mcp/runtime/semantic_setup.py
universal_research_mcp/secure_harness/__init__.py
universal_research_mcp/secure_harness/approval.py
universal_research_mcp/secure_harness/claims.py
universal_research_mcp/secure_harness/codex_runner.py
universal_research_mcp/secure_harness/contracts.py
universal_research_mcp/secure_harness/controller.py
universal_research_mcp/secure_harness/docker_backend.py
universal_research_mcp/secure_harness/posix_stdio.py
universal_research_mcp/secure_harness/snapshot.py
universal_research_mcp/secure_harness/test_contracts.py
universal_research_mcp/secure_harness/worker.py
universal_research_mcp/secure_harness/worker_server.py
universal_research_mcp/tools/__init__.py
universal_research_mcp/tools/build_research_ledger_index.py
universal_research_mcp/tools/build_research_semantic_index.py
universal_research_mcp/tools/distribution.py
universal_research_mcp/tools/query_research_ledger.py
universal_research_mcp/tools/research_device.py
universal_research_mcp/tools/research_event_corrections.py
universal_research_mcp/tools/research_event_corrections_v2.py
universal_research_mcp/tools/research_reference_corpus.py