CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
docs/release-1.0-validation.md
src/mashpit/__init__.py
src/mashpit/annotate.py
src/mashpit/build.py
src/mashpit/gui.py
src/mashpit/html_report.py
src/mashpit/mashpit.py
src/mashpit/merge.py
src/mashpit/query.py
src/mashpit/report.py
src/mashpit/reshard.py
src/mashpit/streamlit_app.py
src/mashpit/tree_plot.py
src/mashpit.egg-info/PKG-INFO
src/mashpit.egg-info/SOURCES.txt
src/mashpit.egg-info/dependency_links.txt
src/mashpit.egg-info/entry_points.txt
src/mashpit.egg-info/requires.txt
src/mashpit.egg-info/top_level.txt
test/test.py
test/test_real_cluster.tsv
test/test_real_metadata.tsv
test/test_trees/PDS000110997.1.newick
test/test_trees/PDS000111058.1.newick