README.md
pyproject.toml
src/ligandparam/__init__.py
src/ligandparam/driver.py
src/ligandparam/interfaces.py
src/ligandparam/log.py
src/ligandparam/parametrization.py
src/ligandparam/utils.py
src/ligandparam.egg-info/PKG-INFO
src/ligandparam.egg-info/SOURCES.txt
src/ligandparam.egg-info/dependency_links.txt
src/ligandparam.egg-info/entry_points.txt
src/ligandparam.egg-info/requires.txt
src/ligandparam.egg-info/top_level.txt
src/ligandparam/cli/__init__.py
src/ligandparam/cli/cli_lighfix.py
src/ligandparam/cli/ligandparam_getparam.py
src/ligandparam/cli/mol2_to_sage.py
src/ligandparam/cli/smiles_to_pdb.py
src/ligandparam/deprecated/stagegausrotation.py
src/ligandparam/deprecated/stagegaussian.py
src/ligandparam/deprecated/stagegaussiantomol2.py
src/ligandparam/deprecated/stageinitialize.py
src/ligandparam/deprecated/stagelazyresp.py
src/ligandparam/deprecated/stageleap.py
src/ligandparam/deprecated/stagenormalizecharges.py
src/ligandparam/deprecated/stageparmchk.py
src/ligandparam/io/__init__.py
src/ligandparam/io/coordinates.py
src/ligandparam/io/gaussianIO.py
src/ligandparam/io/leapIO.py
src/ligandparam/io/smiles.py
src/ligandparam/multiresp/__init__.py
src/ligandparam/multiresp/endstate.py
src/ligandparam/multiresp/functions.py
src/ligandparam/multiresp/intermolequiv.py
src/ligandparam/multiresp/mdinutils.py
src/ligandparam/multiresp/parmhelper.py
src/ligandparam/multiresp/residueresp.py
src/ligandparam/multiresp/respfunctions.py
src/ligandparam/recipes/__init__.py
src/ligandparam/recipes/buildligand.py
src/ligandparam/recipes/dpfreeligand.py
src/ligandparam/recipes/dplazyligand.py
src/ligandparam/recipes/freeligand.py
src/ligandparam/recipes/lazierligand.py
src/ligandparam/recipes/lazyligand.py
src/ligandparam/recipes/optligand.py
src/ligandparam/recipes/rnaligand.py
src/ligandparam/stages/__init__.py
src/ligandparam/stages/abstractstage.py
src/ligandparam/stages/build_system.py
src/ligandparam/stages/charge.py
src/ligandparam/stages/deepmd.py
src/ligandparam/stages/displacemol.py
src/ligandparam/stages/gaussian.py
src/ligandparam/stages/generate_sage_params.py
src/ligandparam/stages/initialize.py
src/ligandparam/stages/leap.py
src/ligandparam/stages/lighfix.py
src/ligandparam/stages/parmchk.py
src/ligandparam/stages/pdb_names.py
src/ligandparam/stages/resp.py
src/ligandparam/stages/sdfconverters.py
src/ligandparam/stages/smilestopdb.py
src/ligandparam/stages/teststage.py
src/ligandparam/stages/typematching.py
src/ligandparam/stages/utilsstages.py
tests/test_module.py