.gitignore
Dockerfile
Makefile
README.md
docker-compose.yml
main.py
make.bat
pyproject.toml
requirements.txt
.github/workflows/publish.yml
assets/clinical_mappings/ICD10codes.csv
assets/clinical_mappings/README.md
assets/clinical_mappings/res195-comorbidity-cci-gold.csv
config/code_search.yaml
config/data_config.yaml
config/data_config_old.yaml
config/eval_config.yaml
config/feature_config.yaml
config/icd_config.yaml
config/threshold_config.yaml
docs/00_architecture_docs.html
docs/01_data_generation_docs.html
docs/02_feature_building_docs.html
docs/03_pipeline_execution_docs.html
docs/04_pipeline_evaluation_docs.html
docs/05_validation_docs.html
docs/index.html
docs/style.css
docs/theme-engine.js
reports/clinical_validation_report.txt
scripts/__init__.py
scripts/main.py
scripts/_prev/01_generate_data.py
scripts/_prev/02_build_features.py
scripts/_prev/03_evaluate_scores.py
src/__init__.py
src/icare_risk/__init__.py
src/icare_risk/features.py
src/icare_risk/generators.py
src/icare_risk/metrics.py
src/icare_risk/phenotypes.py
src/icare_risk/scores.py
src/icare_risk/utils.py
src/icare_risk.egg-info/PKG-INFO
src/icare_risk.egg-info/SOURCES.txt
src/icare_risk.egg-info/dependency_links.txt
src/icare_risk.egg-info/entry_points.txt
src/icare_risk.egg-info/requires.txt
src/icare_risk.egg-info/scm_file_list.json
src/icare_risk.egg-info/scm_version.json
src/icare_risk.egg-info/top_level.txt
src/icare_risk/config/__init__.py
src/icare_risk/config/code_search.yaml
src/icare_risk/config/data_config.yaml
src/icare_risk/config/eval_config.yaml
src/icare_risk/config/feature_config.yaml
src/icare_risk/config/threshold_config.yaml
src/icare_risk/scripts/__init__.py
src/icare_risk/scripts/a_generate_data.py
src/icare_risk/scripts/b_build_features_icare.py
src/icare_risk/scripts/c_evaluate_scores.py
src/icare_risk/scripts/d_evaluate_thresholds.py
src/icare_risk/scripts/e_validate_scores.py
src/icare_risk/scripts/f_find_clinical_codes.py
src/icare_risk/tests/fixtures/cases.csv
tests/cases.csv
tests/test_generators.py
tests/test_phenotypes.py
tests/test_run.py
tests/test_scores.py
tests/test_scripts.py
tests/verify_pipeline.py
tests/fixtures/icare_episodes_anon.csv
tests/fixtures/icare_microbiology_anon.csv
tests/fixtures/icare_pathology_blood_anon.csv
tests/fixtures/icare_pharmacy_prescribing_anon.csv
tests/fixtures/icare_problems_anon.csv
tests/fixtures/icare_vital_signs_anon.csv
tests/fixtures/outputs/test_results_check.csv
tutorials/01_generating_synthetic_data.ipynb
tutorials/02_building_features_from_config.ipynb
tutorials/03_phenotyping_and_scoring.ipynb