LICENSE
MANIFEST.in
README.md
THIRD_PARTY.md
pyproject.toml
setup.py
docs/v1/ARCHITECTURE.md
docs/v1/CONSENSUS.md
docs/v1/GENESENSUS_0.6.0a3.md
docs/v1/IMPLEMENTATION_PLAN.md
docs/v1/OUTPUT_FORMATS.md
docs/v1/README.md
docs/v1/SCIENTIFIC_METHODS.md
docs/v1/VALIDATION.md
gapms.egg-info/PKG-INFO
gapms.egg-info/SOURCES.txt
gapms.egg-info/dependency_links.txt
gapms.egg-info/entry_points.txt
gapms.egg-info/requires.txt
gapms.egg-info/top_level.txt
gapms_v1/__init__.py
gapms_v1/__main__.py
gapms_v1/assessment.py
gapms_v1/classification.py
gapms_v1/cli.py
gapms_v1/common.py
gapms_v1/confidence_features.py
gapms_v1/consensus_engine.py
gapms_v1/mapping.py
gapms_v1/models.py
gapms_v1/orf_projection.py
gapms_v1/outputs.py
gapms_v1/peptides.py
gapms_v1/protein_mapper.py
gapms_v1/refinement.py
gapms_v1/report_figure.py
gapms_v1/rnaseq.py
gapms_v1/workflow.py
gapms_v1/_genesensus/LICENSE
gapms_v1/_genesensus/VENDORED.json
gapms_v1/_genesensus/__init__.py
gapms_v1/_genesensus/__main__.py
gapms_v1/_genesensus/adaptive.py
gapms_v1/_genesensus/annotation.py
gapms_v1/_genesensus/available.py
gapms_v1/_genesensus/cli.py
gapms_v1/_genesensus/config.py
gapms_v1/_genesensus/corroborated.py
gapms_v1/_genesensus/diagnostics.py
gapms_v1/_genesensus/direct_molecular.py
gapms_v1/_genesensus/exchange.py
gapms_v1/_genesensus/exon_support.py
gapms_v1/_genesensus/genome.py
gapms_v1/_genesensus/graph.py
gapms_v1/_genesensus/graph_cache.py
gapms_v1/_genesensus/intervals.py
gapms_v1/_genesensus/isoform_guards.py
gapms_v1/_genesensus/isoforms.py
gapms_v1/_genesensus/joint.py
gapms_v1/_genesensus/loading.py
gapms_v1/_genesensus/local_molecular.py
gapms_v1/_genesensus/locus_select.py
gapms_v1/_genesensus/models.py
gapms_v1/_genesensus/molecular.py
gapms_v1/_genesensus/molecular_exchange.py
gapms_v1/_genesensus/molecular_state_utility.py
gapms_v1/_genesensus/molecular_strategy.py
gapms_v1/_genesensus/normalization.py
gapms_v1/_genesensus/orf_diagnostics.py
gapms_v1/_genesensus/peptide_context.py
gapms_v1/_genesensus/peptides.py
gapms_v1/_genesensus/pipeline.py
gapms_v1/_genesensus/provenance.py
gapms_v1/_genesensus/rna.py
gapms_v1/_genesensus/rna_geometry.py
gapms_v1/_genesensus/scoped.py
gapms_v1/_genesensus/scoring.py
gapms_v1/_genesensus/selection.py
gapms_v1/_genesensus/source_splice.py
gapms_v1/_genesensus/splice_prior.py
gapms_v1/_genesensus/state_utility.py
gapms_v1/_genesensus/support.py