SMS_BP
Single Molecule Simulations -BP
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SMS_BP.run_cell_simulation Namespace Reference

Functions

 main_CLI ()
 
 main_noCLI (file)
 

Variables

 project_directory
 
 config_file
 

Function Documentation

◆ main_CLI()

SMS_BP.run_cell_simulation.main_CLI ( )
CLI tool to run cell simulation.

Usage:
    python run_cell_simulation.py <config_file> [--output_path <output_path>]

Arguments:
    config_file     Path to the configuration file

Options:
    --output_path   Path to the output directory

◆ main_noCLI()

SMS_BP.run_cell_simulation.main_noCLI ( file)
Run cell simulation without using CLI arguments

Variable Documentation

◆ config_file

SMS_BP.run_cell_simulation.config_file
Initial value:
1= os.path.join(
2 project_directory, "SMS_BP", "sim_config.json")

◆ project_directory

SMS_BP.run_cell_simulation.project_directory
Initial value:
1= os.path.dirname(
2 os.path.dirname(os.path.abspath(__file__)))