MSA_Pairformer/Untitled,sha256=lFVXCeh-t0GzG50QUWIM_U3jRscgCqyQlIMQ1mCicmE,6795
MSA_Pairformer/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
MSA_Pairformer/categorical_jacobian.py,sha256=1RtR1PYPwpVdy7ggFmEqkXT2q5j7RwdLXMNEYHjnKyE,2213
MSA_Pairformer/chunk_layer.py,sha256=KKb0ZuPiWCe7ox0RFGL-vCgsE05qiaVgyekuEvdYUZA,5788
MSA_Pairformer/core.py,sha256=8DzeMmpMkcBUXBJmZ1ROf0YeB5838DZfQqxuSc44x4s,4692
MSA_Pairformer/custom_typing.py,sha256=kyL-jsXfUKm9QDHiFNxRU-oj_SLKVT_0HmL4Jn-rQwM,839
MSA_Pairformer/data_downloader.py,sha256=c3irmfnyYirdID2qZn9CayNRBlAGRQ3N4h6zO49R2Cw,1456
MSA_Pairformer/dataset.py,sha256=fMLT7xpbW2vF5lPhynpYpD9aN4H1pJ8zJzspM0rnwsg,31367
MSA_Pairformer/dataset_v2.py,sha256=aCKFwlEPE86PhPtV-o1g-lW1TDYhayeoizzXOvSNdUU,31708
MSA_Pairformer/model.py,sha256=MtfQL96f2tvI9ocfCKXFOkTY91m8X_vEQWmOB6Gsjf4,31479
MSA_Pairformer/outer_product.py,sha256=zL_c04FqkZoaqps-i7Dk1NyZRchyWi06ee5IlIRKfEI,15797
MSA_Pairformer/pairwise_operations.py,sha256=iLl2zi7SBMqGHcYqn1Z8VqZOjKo9IucRTAhOAoYL0bw,18075
MSA_Pairformer/plotting.py,sha256=H1biZyg-L0Ee0fWvVlRSBfZKDUzKXcWE-tJhlo9CiIw,11084
MSA_Pairformer/positional_encoding.py,sha256=pGEyfeMsKL2D8MaNDV_qLG0EwsSLbc4ZFhBJsRsZuqw,3330
MSA_Pairformer/potts_diffpalm_utils.py,sha256=E6TvDoVOHTKkJrFSkps1mi6YBnNImJIDHhQPGUc2y-k,1053
MSA_Pairformer/proteingym_utils.py,sha256=mrc94BdybeV6IGst0JgGgTcbtXqUC4-E_ux8ShznuFk,29981
MSA_Pairformer/reformat_weights_triangle_updates.ipynb,sha256=R6UJDdSnyfW_1xQZ3LynQHqy3JrVmFvp7rX-rYkFFJI,7067
MSA_Pairformer/regression.py,sha256=SXI6beLsOhsHi0GKWGmapvo_D4B-rmuhs38qiBfPg2w,3907
MSA_Pairformer/training_utils.py,sha256=I1PO51HPe24mqPSNR7vW4rHx52GdnwJtY5mQkPiFNpA,12972
MSA_Pairformer/utils.py,sha256=essJPD8bUlDowyNwT7P1W723pDGruT2oDu1BawTnUaQ,26309
MSA_Pairformer/.claude/settings.local.json,sha256=gkUitvpxWmAquZOnrG__yEh-uNl96obNtLaAsbmheVU,137
MSA_Pairformer/pairing_optimization/datasets.py,sha256=UAw23hIvN9iQo-ICqBllLGgYSuqUQQIotZWl92nSWvE,7765
MSA_Pairformer/pairing_optimization/gumbel_sinkhorn_utils.py,sha256=AKt5WdS7QVoILHefIaLh8DdliN_nH_ng3GenelWENNQ,3516
MSA_Pairformer/pairing_optimization/mp_em.py,sha256=rN7M-PRFpFh9bHrP8JvIk6E6nj5MECpkqTpew5_XRhw,22219
MSA_Pairformer/pairing_optimization/mp_em_old.py,sha256=xoYGuWrjcR1sXADp_7cvIKjNPbk2jTMKXqgMDQwiH78,31600
MSA_Pairformer/pairing_optimization/mp_em_streamlined.py,sha256=36XfZGXcJwGJW3Y6YzD6M_rVLvMxVlDoturtzk52Wgg,21210
MSA_Pairformer/pairing_optimization/mp_pdp.py,sha256=9dH_grjm3ZOBej1SyvEPSMXPrnxZbxI0fhW_kcUi_2c,40412
MSA_Pairformer/pairing_optimization/mp_pdp_slight_deviation.py,sha256=wuIbYYABAPI-EZskiN3cmmy_3Cs8f_3phh3YNDYpvAM,40230
MSA_Pairformer/pairing_optimization/mp_pdp_streamlined.py,sha256=ienv1yf6HTVwGcT1qq6ZFny4Vznzld_fU1rkLz5Qgbc,39879
MSA_Pairformer/pairing_optimization/msa_parsing.py,sha256=q3QWohBY0AQUDJH_W363IHRDetQCJugoFcPEmEYF1Z0,1392
MSA_Pairformer/pairing_optimization/msa_transformer_diffpalm.py,sha256=niDLRGZt0cbkySMqYmPdEojzzAp72vO3H9JeZF4Emak,31526
msa_pairformer-1.0.2.dist-info/METADATA,sha256=GlqRm0ZEGRwO0PnIs3BykGUPIpnfHzdGDqFmEc1uXuI,9715
msa_pairformer-1.0.2.dist-info/WHEEL,sha256=lCkmxWfQsSc9CfIClYeavTdQeEX2toPqufh9gI35EQA,87
msa_pairformer-1.0.2.dist-info/licenses/LICENSE,sha256=vtRobUWJtfyjkvA63iQ7KIso-mkUrx95ijg2IXYnvIU,1194
msa_pairformer-1.0.2.dist-info/RECORD,,
