.gitignore
MANIFEST.in
Makefile
README.md
pyproject.toml
.github/workflows/build-deploy-docs.yml
.github/workflows/python-publish.yml
.github/workflows/run-tests.yml
.pdoc_template/config.mako
data/flu/README.md
data/flu/cluster_cons.json
data/flu/flu-aa.fasta
data/flu/a_tx37_2024/HA.fasta
data/flu/a_tx37_2024/MP.fasta
data/flu/a_tx37_2024/NA.fasta
data/flu/a_tx37_2024/NP.fasta
data/flu/a_tx37_2024/NS.fasta
data/flu/a_tx37_2024/PA.fasta
data/flu/a_tx37_2024/PB1.fasta
data/flu/a_tx37_2024/PB2.fasta
eremitalpa/__init__.py
eremitalpa/bio.py
eremitalpa/eremitalpa.py
eremitalpa/flu_wider.py
eremitalpa/influenza.py
eremitalpa/lib.py
eremitalpa/spread_points.py
eremitalpa.egg-info/PKG-INFO
eremitalpa.egg-info/SOURCES.txt
eremitalpa.egg-info/dependency_links.txt
eremitalpa.egg-info/entry_points.txt
eremitalpa.egg-info/requires.txt
eremitalpa.egg-info/top_level.txt
eremitalpa/scripts/__init__.py
eremitalpa/scripts/align_to_reference.py
eremitalpa/scripts/convert_seq.py
eremitalpa/scripts/filter_similar_hd.py
eremitalpa/scripts/influenza_cluster_color_palette.py
eremitalpa/scripts/make_chimera.py
eremitalpa/scripts/plot_labelled_phylogeny.py
eremitalpa/scripts/print_phylogeny_leaves.py
eremitalpa/scripts/revcomp_match.py
eremitalpa/scripts/write_iqtree_ancestral_seqs.py
test/test_bio.py
test/test_eremitalpa.py
test/test_influenza.py
test/test_lib.py
test/test_trees/a.tre
test/test_trees/b.tre