LICENSE
pyproject.toml
readme.md
src/neuromaestro/__init__.py
src/neuromaestro.egg-info/PKG-INFO
src/neuromaestro.egg-info/SOURCES.txt
src/neuromaestro.egg-info/dependency_links.txt
src/neuromaestro.egg-info/entry_points.txt
src/neuromaestro.egg-info/requires.txt
src/neuromaestro.egg-info/top_level.txt
src/neuromaestro/config/config.yaml
src/neuromaestro/config/hpc_config.yaml
src/neuromaestro/config/project_config/branch_config.yaml
src/neuromaestro/config/project_config/dagtest_config.yaml
src/neuromaestro/config/project_config/ds027_config.yaml
src/neuromaestro/config/project_config/template_config.yaml
src/neuromaestro/config/project_config/test_config.yaml
src/neuromaestro/config/results_check/branch_checks.yaml
src/neuromaestro/config/results_check/dagtest_checks.yaml
src/neuromaestro/config/results_check/ds027_checks.yaml
src/neuromaestro/config/results_check/template_checks.yaml
src/neuromaestro/config/results_check/test_checks.yaml
src/neuromaestro/interface/app.py
src/neuromaestro/interface/auth.py
src/neuromaestro/interface/run_gui.py
src/neuromaestro/interface/assets/theme.css
src/neuromaestro/interface/callbacks/__init__.py
src/neuromaestro/interface/callbacks/analysis_callbacks.py
src/neuromaestro/interface/callbacks/config_callbacks.py
src/neuromaestro/interface/callbacks/job_monitor_callbacks.py
src/neuromaestro/interface/components/__init__.py
src/neuromaestro/interface/components/analysis_control.py
src/neuromaestro/interface/components/job_monitor.py
src/neuromaestro/interface/components/project_config.py
src/neuromaestro/interface/utils/__init__.py
src/neuromaestro/interface/utils/plot_utils.py
src/neuromaestro/pipeline/__init__.py
src/neuromaestro/pipeline/core.py
src/neuromaestro/pipeline/dag.py
src/neuromaestro/pipeline/utils/__init__.py
src/neuromaestro/pipeline/utils/bids_validation.py
src/neuromaestro/pipeline/utils/config_utils.py
src/neuromaestro/pipeline/utils/db_backup.py
src/neuromaestro/pipeline/utils/detect_subjects.py
src/neuromaestro/pipeline/utils/generate_project_config.py
src/neuromaestro/pipeline/utils/generate_results_check.py
src/neuromaestro/pipeline/utils/hpc_utils.py
src/neuromaestro/pipeline/utils/init_utils.py
src/neuromaestro/pipeline/utils/job_db.py
src/neuromaestro/pipeline/utils/merge_logs_create_db.py
src/neuromaestro/pipeline/utils/output_checker.py
src/neuromaestro/pipeline/utils/preflight.py
src/neuromaestro/pipeline/utils/report_generator.py
src/neuromaestro/pipeline/utils/report_html.py
src/neuromaestro/pipeline/utils/wrapper_functions.sh
src/neuromaestro/scripts/__init__.py
src/neuromaestro/scripts/branch/afni_cards_postprocessing.sh
src/neuromaestro/scripts/branch/afni_cards_preprocessing.sh
src/neuromaestro/scripts/branch/afni_kidvid_postprocessing.sh
src/neuromaestro/scripts/branch/afni_kidvid_preprocess.sh
src/neuromaestro/scripts/branch/dcm2bids_convert_BIDS.sh
src/neuromaestro/scripts/branch/fmriprep_rs.sh
src/neuromaestro/scripts/branch/mriqc_group.sh
src/neuromaestro/scripts/branch/mriqc_individual.sh
src/neuromaestro/scripts/branch/qsiprep.sh
src/neuromaestro/scripts/branch/qsirecon.sh
src/neuromaestro/scripts/branch/sswarp_scratch.sh
src/neuromaestro/scripts/branch/unzip_rename.sh
src/neuromaestro/scripts/branch/xcpd_rs.sh
src/neuromaestro/scripts/dagtest/afni_cards_postprocessing.sh
src/neuromaestro/scripts/dagtest/afni_cards_preprocessing.sh
src/neuromaestro/scripts/dagtest/afni_kidvid_postprocessing.sh
src/neuromaestro/scripts/dagtest/afni_kidvid_preprocess.sh
src/neuromaestro/scripts/dagtest/dcm2bids_convert_BIDS.sh
src/neuromaestro/scripts/dagtest/fmriprep_rs.sh
src/neuromaestro/scripts/dagtest/mriqc_group.sh
src/neuromaestro/scripts/dagtest/mriqc_individual.sh
src/neuromaestro/scripts/dagtest/one_sample_ttest.sh
src/neuromaestro/scripts/dagtest/qsiprep.sh
src/neuromaestro/scripts/dagtest/qsirecon.sh
src/neuromaestro/scripts/dagtest/sdcflows.sh
src/neuromaestro/scripts/dagtest/sswarp_scratch.sh
src/neuromaestro/scripts/dagtest/unzip_rename.sh
src/neuromaestro/scripts/dagtest/xcpd_rs.sh
src/neuromaestro/scripts/ds027/emomatching_postprocess.sh
src/neuromaestro/scripts/ds027/emomatching_preprocess.sh
src/neuromaestro/scripts/ds027/fmriprep_rs.sh
src/neuromaestro/scripts/ds027/make_afni_timing.py
src/neuromaestro/scripts/ds027/mriqc_group.sh
src/neuromaestro/scripts/ds027/mriqc_individual.sh
src/neuromaestro/scripts/ds027/qsiprep.sh
src/neuromaestro/scripts/ds027/qsirecon.sh
src/neuromaestro/scripts/ds027/sswarp_scratch.sh
src/neuromaestro/scripts/ds027/stopsignal_postprocess.sh
src/neuromaestro/scripts/ds027/stopsignal_preprocess.sh
src/neuromaestro/scripts/ds027/workingmemory_postprocess.sh
src/neuromaestro/scripts/ds027/workingmemory_preprocess.sh
src/neuromaestro/scripts/ds027/xcpd_rs.sh
src/neuromaestro/scripts/template/afni_cards_postprocessing.sh
src/neuromaestro/scripts/template/afni_cards_preprocessing.sh
src/neuromaestro/scripts/template/afni_kidvid_postprocessing.sh
src/neuromaestro/scripts/template/afni_kidvid_preprocess.sh
src/neuromaestro/scripts/template/dcm2bids_convert_BIDS.sh
src/neuromaestro/scripts/template/fmriprep_rs.sh
src/neuromaestro/scripts/template/ica_rest_postprocess.sh
src/neuromaestro/scripts/template/ica_rest_preprocess.sh
src/neuromaestro/scripts/template/ica_task_postprocess.sh
src/neuromaestro/scripts/template/ica_task_preprocess.sh
src/neuromaestro/scripts/template/mriqc_group.sh
src/neuromaestro/scripts/template/mriqc_individual.sh
src/neuromaestro/scripts/template/qsiprep.sh
src/neuromaestro/scripts/template/qsirecon.sh
src/neuromaestro/scripts/template/sdcflows.sh
src/neuromaestro/scripts/template/sswarp_scratch.sh
src/neuromaestro/scripts/template/unzip_rename.sh
src/neuromaestro/scripts/template/xcpd_rs.sh
src/neuromaestro/scripts/test/afni_cards_postprocessing.sh
src/neuromaestro/scripts/test/afni_cards_preprocessing.sh
src/neuromaestro/scripts/test/afni_kidvid_postprocessing.sh
src/neuromaestro/scripts/test/afni_kidvid_preprocess.sh
src/neuromaestro/scripts/test/dcm2bids_convert_BIDS.sh
src/neuromaestro/scripts/test/fmriprep_rs.sh
src/neuromaestro/scripts/test/mriqc_group.sh
src/neuromaestro/scripts/test/mriqc_individual.sh
src/neuromaestro/scripts/test/qsiprep.sh
src/neuromaestro/scripts/test/qsirecon.sh
src/neuromaestro/scripts/test/sdcflows.sh
src/neuromaestro/scripts/test/sswarp_scratch.sh
src/neuromaestro/scripts/test/unzip_rename.sh
src/neuromaestro/scripts/test/xcpd_rs.sh
tests/test_analysis_callbacks.py
tests/test_bids_validation.py
tests/test_config_callbacks.py
tests/test_config_contract.py
tests/test_config_utils.py
tests/test_core.py
tests/test_dag.py
tests/test_dag_visualization.py
tests/test_db_backup.py
tests/test_detect_subjects.py
tests/test_e2e_dry_run.py
tests/test_gui_auth.py
tests/test_hpc_utils.py
tests/test_init_utils.py
tests/test_input_dir_resolution.py
tests/test_job_db.py
tests/test_job_monitor_callbacks.py
tests/test_merge_logs.py
tests/test_output_checker.py
tests/test_pbs_backend.py
tests/test_plot_utils.py
tests/test_preflight.py
tests/test_report_generator.py
tests/test_resume.py
tests/test_run_command.py
tests/test_ui_layout.py
tests/test_wrapper_functions.py