LICENSE
README.md
pyproject.toml
src/kmate/__init__.py
src/kmate/block_em.py
src/kmate/block_haplotype_em.py
src/kmate/build_kmer_db.py
src/kmate/build_kmer_pa.py
src/kmate/build_var_pa.py
src/kmate/cli.py
src/kmate/em_solver.py
src/kmate/filter_kmer_pa_production.py
src/kmate/kmer_count.py
src/kmate/per_sample_per_chrom.py
src/kmate/selftest.py
src/kmate.egg-info/PKG-INFO
src/kmate.egg-info/SOURCES.txt
src/kmate.egg-info/dependency_links.txt
src/kmate.egg-info/entry_points.txt
src/kmate.egg-info/requires.txt
src/kmate.egg-info/top_level.txt
src/kmate/data/selftest/kmer_pa_Chr1.kmer_pa.npz
src/kmate/data/selftest/kmer_pa_Chr1.meta.npz
src/kmate/data/selftest/reads.fq.gz
src/kmate/data/selftest/truth_h.tsv
src/kmate/data/selftest/var_Chr1.meta.npz
src/kmate/data/selftest/var_Chr1.var_called.npz
src/kmate/data/selftest/var_Chr1.var_pa.npz
tests/test_genomewide_validation.py
tests/test_kmer_count.py