chemprep.descriptors
1from rdkit import Chem 2from rdkit.Chem import Descriptors 3 4def get_all_descriptors(smiles: str): 5 """ 6 Calculates all available descriptors for a given SMILES string. 7 8 Args: 9 smiles: The SMILES string of the molecule. 10 11 Returns: 12 A dictionary of all available descriptors. 13 """ 14 mol = Chem.MolFromSmiles(smiles) 15 if mol is None: 16 raise ValueError("Invalid SMILES string") 17 18 descriptors = {} 19 for name, func in Descriptors.descList: 20 try: 21 descriptors[name] = func(mol) 22 except Exception as e: 23 descriptors[name] = None 24 print(f"Could not calculate descriptor {name} for {smiles}: {e}") 25 26 return descriptors
def
get_all_descriptors(smiles: str):
5def get_all_descriptors(smiles: str): 6 """ 7 Calculates all available descriptors for a given SMILES string. 8 9 Args: 10 smiles: The SMILES string of the molecule. 11 12 Returns: 13 A dictionary of all available descriptors. 14 """ 15 mol = Chem.MolFromSmiles(smiles) 16 if mol is None: 17 raise ValueError("Invalid SMILES string") 18 19 descriptors = {} 20 for name, func in Descriptors.descList: 21 try: 22 descriptors[name] = func(mol) 23 except Exception as e: 24 descriptors[name] = None 25 print(f"Could not calculate descriptor {name} for {smiles}: {e}") 26 27 return descriptors
Calculates all available descriptors for a given SMILES string.
Args: smiles: The SMILES string of the molecule.
Returns: A dictionary of all available descriptors.