LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
src/tadamz/__init__.py
src/tadamz/adapt_retention_time.py
src/tadamz/check_qualifier_peaks.py
src/tadamz/classify_peaks.py
src/tadamz/coeluting_peaks.py
src/tadamz/correct_isotopologue_overlays.py
src/tadamz/create_random_forest_peak_classifier.py
src/tadamz/example_workflow.py
src/tadamz/extract_peaks.py
src/tadamz/extract_peaks_from_chromatograms.py
src/tadamz/in_out.py
src/tadamz/normalize_peaks.py
src/tadamz/peaks_table.py
src/tadamz/processing_steps.py
src/tadamz/quantify.py
src/tadamz/std_free_normalization.py
src/tadamz/track_changes.py
src/tadamz/update_sample_information.py
src/tadamz/utils.py
src/tadamz/workflow.py
src/tadamz.egg-info/PKG-INFO
src/tadamz.egg-info/SOURCES.txt
src/tadamz.egg-info/dependency_links.txt
src/tadamz.egg-info/not-zip-safe
src/tadamz.egg-info/requires.txt
src/tadamz.egg-info/top_level.txt
src/tadamz/calibration/__init__.py
src/tadamz/calibration/calibrate.py
src/tadamz/calibration/calibration_model.py
src/tadamz/data/default_config.txt
src/tadamz/data/example_peaks_info_table.xlsx
src/tadamz/data/srm_peak_classifier.onnx
src/tadamz/data/srm_table_for_predictor_curated.table
src/tadamz/data/uplc_MS1_QEx_peak_classifier.onnx
src/tadamz/data/uplc_MS1_predictor.table
src/tadamz/emzed_fixes/__init__.py
src/tadamz/emzed_fixes/_empty_peakmap.py
src/tadamz/emzed_fixes/fix_integrate_chromatogram_formats.py
src/tadamz/emzed_fixes/load_peak_map.py
src/tadamz/emzed_fixes/ms_chromatogram_to_peakmap.py
src/tadamz/emzed_fixes/optimizations.py
src/tadamz/emzed_fixes/pick_ms_chromatogram_peaks.py
src/tadamz/emzed_fixes/subtract_baselines.py
src/tadamz/emzed_fixes/quantification/__init__.py
src/tadamz/emzed_fixes/quantification/peak_integration.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/__init__.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/asymmetric_gauss_model.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/base.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/linear_interpolation_model.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/no_model.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/savgol_model.py
src/tadamz/emzed_fixes/quantification/peak_shape_models/simplified_emg.py
src/tadamz/scoring/__init__.py
src/tadamz/scoring/peak_metrics.py
src/tadamz/scoring/random_forest_peak_classification.py
tests/test_adapt_retention_time.py
tests/test_calibrate.py
tests/test_calibration_model.py
tests/test_check_qualifier_peaks.py
tests/test_classify_peaks.py
tests/test_coeluting_peaks.py
tests/test_correct_for_isotopologue_overlays.py
tests/test_create_random_forest_peaks_classifier.py
tests/test_extract_peaks.py
tests/test_extract_peaks_from_chromatograms.py
tests/test_in_out.py
tests/test_normalize.py
tests/test_pick_ms_chromatogram_peaks.py
tests/test_processing_steps.py
tests/test_quantify.py
tests/test_run_workflow.py
tests/test_subtract_baselines.py
tests/test_track_changes.py
tests/test_update_peak_metrics.py
tests/test_update_sample_information.py
tests/test_utils.py