README.md
pyproject.toml
./gp_agent_tool/compute_dataset_feature.py
./gp_agent_tool/config.py
./gp_agent_tool/llm_client.py
./gp_agent_tool/logging_utils.py
./gp_agent_tool/main.py
./gp_agent_tool/experience/create_masked_dataset_summary.py
./gp_agent_tool/experience/dataset_summary_info.py
./gp_agent_tool/experience/experience_info.py
./gp_agent_tool/experience/get_matched_experience.py
./gp_agent_tool/read_agent/__init__.py
./gp_agent_tool/read_agent/nodes.py
./gp_agent_tool/read_agent/prompts.py
./gp_agent_tool/read_agent/python_repl_tool.py
./gp_agent_tool/read_agent/state.py
./gp_agent_tool/read_agent/workflow.py
./gpbench/__init__.py
./gpbench/_selftest.py
./gpbench/method_class/__init__.py
./gpbench/method_class/BayesA_c/BayesA_class.py
./gpbench/method_class/BayesA_c/__init__.py
./gpbench/method_class/BayesA_c/_bayesfromR.py
./gpbench/method_class/BayesA_c/_param_free_base_model.py
./gpbench/method_class/BayesA_c/bayesAfromR.py
./gpbench/method_class/BayesB_c/BayesB_class.py
./gpbench/method_class/BayesB_c/__init__.py
./gpbench/method_class/BayesB_c/_bayesfromR.py
./gpbench/method_class/BayesB_c/_param_free_base_model.py
./gpbench/method_class/BayesB_c/bayesBfromR.py
./gpbench/method_class/BayesC_c/BayesC_class.py
./gpbench/method_class/BayesC_c/__init__.py
./gpbench/method_class/BayesC_c/_bayesfromR.py
./gpbench/method_class/BayesC_c/_param_free_base_model.py
./gpbench/method_class/BayesC_c/bayesCfromR.py
./gpbench/method_class/CropARNet_c/CropARNet_class.py
./gpbench/method_class/CropARNet_c/CropARNet_he_class.py
./gpbench/method_class/CropARNet_c/__init__.py
./gpbench/method_class/CropARNet_c/base_CropARNet_class.py
./gpbench/method_class/Cropformer_c/Cropformer_class.py
./gpbench/method_class/Cropformer_c/__init__.py
./gpbench/method_class/Cropformer_c/cropformer_he_class.py
./gpbench/method_class/DL_GWAS_c/DL_GWAS_class.py
./gpbench/method_class/DL_GWAS_c/DL_GWAS_he_class.py
./gpbench/method_class/DL_GWAS_c/__init__.py
./gpbench/method_class/DNNGP_c/DNNGP_class.py
./gpbench/method_class/DNNGP_c/DNNGP_he_class.py
./gpbench/method_class/DNNGP_c/__init__.py
./gpbench/method_class/DNNGP_c/base_dnngp_class.py
./gpbench/method_class/DeepCCR_c/DeepCCR_class.py
./gpbench/method_class/DeepCCR_c/DeepCCR_he_class.py
./gpbench/method_class/DeepCCR_c/__init__.py
./gpbench/method_class/DeepCCR_c/base_DeepCCR_class.py
./gpbench/method_class/DeepGS_c/DeepGS_class.py
./gpbench/method_class/DeepGS_c/DeepGS_he_class.py
./gpbench/method_class/DeepGS_c/__init__.py
./gpbench/method_class/DeepGS_c/base_deepgs_class.py
./gpbench/method_class/EIR_c/EIR_class.py
./gpbench/method_class/EIR_c/EIR_he_class.py
./gpbench/method_class/EIR_c/__init__.py
./gpbench/method_class/EIR_c/utils/__init__.py
./gpbench/method_class/EIR_c/utils/array_output_modules.py
./gpbench/method_class/EIR_c/utils/common.py
./gpbench/method_class/EIR_c/utils/lcl_layers.py
./gpbench/method_class/EIR_c/utils/logging.py
./gpbench/method_class/EIR_c/utils/mlp_layers.py
./gpbench/method_class/EIR_c/utils/models_locally_connected.py
./gpbench/method_class/EIR_c/utils/transformer_models.py
./gpbench/method_class/ElasticNet_c/ElasticNet_class.py
./gpbench/method_class/ElasticNet_c/ElasticNet_he_class.py
./gpbench/method_class/ElasticNet_c/__init__.py
./gpbench/method_class/G2PDeep_c/G2PDeep_he_class.py
./gpbench/method_class/G2PDeep_c/G2Pdeep_class.py
./gpbench/method_class/G2PDeep_c/__init__.py
./gpbench/method_class/G2PDeep_c/base_G2PDeep_class.py
./gpbench/method_class/GBLUP_c/GBLUP_class.py
./gpbench/method_class/GBLUP_c/__init__.py
./gpbench/method_class/GEFormer_c/GEFormer_class.py
./gpbench/method_class/GEFormer_c/GEFormer_he_class.py
./gpbench/method_class/GEFormer_c/__init__.py
./gpbench/method_class/GEFormer_c/gMLP_class.py
./gpbench/method_class/LightGBM_c/LightGBM_class.py
./gpbench/method_class/LightGBM_c/LightGBM_he_class.py
./gpbench/method_class/LightGBM_c/__init__.py
./gpbench/method_class/RF_c/RF_GPU_class.py
./gpbench/method_class/RF_c/RF_GPU_he_class.py
./gpbench/method_class/RF_c/__init__.py
./gpbench/method_class/SVC_c/SVC_GPU.py
./gpbench/method_class/SVC_c/SVC_GPU_he.py
./gpbench/method_class/SVC_c/__init__.py
./gpbench/method_class/SoyDNGP_c/AlexNet_206_class.py
./gpbench/method_class/SoyDNGP_c/SoyDNGP_class.py
./gpbench/method_class/SoyDNGP_c/SoyDNGP_he_class.py
./gpbench/method_class/SoyDNGP_c/__init__.py
./gpbench/method_class/XGBoost_c/XGboost_GPU_class.py
./gpbench/method_class/XGBoost_c/XGboost_GPU_he_class.py
./gpbench/method_class/XGBoost_c/__init__.py
./gpbench/method_class/rrBLUP_c/__init__.py
./gpbench/method_class/rrBLUP_c/rrBLUP_class.py
./gpbench/method_reg/__init__.py
./gpbench/method_reg/BayesA_r/BayesA.py
./gpbench/method_reg/BayesA_r/__init__.py
./gpbench/method_reg/BayesA_r/_bayesfromR.py
./gpbench/method_reg/BayesA_r/_param_free_base_model.py
./gpbench/method_reg/BayesA_r/bayesAfromR.py
./gpbench/method_reg/BayesB_r/BayesB.py
./gpbench/method_reg/BayesB_r/__init__.py
./gpbench/method_reg/BayesB_r/_bayesfromR.py
./gpbench/method_reg/BayesB_r/_param_free_base_model.py
./gpbench/method_reg/BayesB_r/bayesBfromR.py
./gpbench/method_reg/BayesC_r/BayesC.py
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./gpbench/method_reg/BayesC_r/_bayesfromR.py
./gpbench/method_reg/BayesC_r/_param_free_base_model.py
./gpbench/method_reg/BayesC_r/bayesCfromR.py
./gpbench/method_reg/CropARNet_r/CropARNet.py
./gpbench/method_reg/CropARNet_r/CropARNet_Hyperparameters.py
./gpbench/method_reg/CropARNet_r/__init__.py
./gpbench/method_reg/CropARNet_r/base_CropARNet.py
./gpbench/method_reg/Cropformer_r/Cropformer.py
./gpbench/method_reg/Cropformer_r/Cropformer_Hyperparameters.py
./gpbench/method_reg/Cropformer_r/__init__.py
./gpbench/method_reg/DL_GWAS_r/DL_GWAS.py
./gpbench/method_reg/DL_GWAS_r/DL_GWAS_Hyperparameters.py
./gpbench/method_reg/DL_GWAS_r/__init__.py
./gpbench/method_reg/DNNGP_r/DNNGP.py
./gpbench/method_reg/DNNGP_r/DNNGP_Hyperparameters.py
./gpbench/method_reg/DNNGP_r/__init__.py
./gpbench/method_reg/DNNGP_r/base_dnngp.py
./gpbench/method_reg/DeepCCR_r/DeepCCR.py
./gpbench/method_reg/DeepCCR_r/DeepCCR_Hyperparameters.py
./gpbench/method_reg/DeepCCR_r/__init__.py
./gpbench/method_reg/DeepCCR_r/base_DeepCCR.py
./gpbench/method_reg/DeepGS_r/DeepGS.py
./gpbench/method_reg/DeepGS_r/DeepGS_Hyperparameters.py
./gpbench/method_reg/DeepGS_r/__init__.py
./gpbench/method_reg/DeepGS_r/base_deepgs.py
./gpbench/method_reg/EIR_r/EIR.py
./gpbench/method_reg/EIR_r/EIR_Hyperparameters.py
./gpbench/method_reg/EIR_r/__init__.py
./gpbench/method_reg/EIR_r/utils/__init__.py
./gpbench/method_reg/EIR_r/utils/array_output_modules.py
./gpbench/method_reg/EIR_r/utils/common.py
./gpbench/method_reg/EIR_r/utils/lcl_layers.py
./gpbench/method_reg/EIR_r/utils/logging.py
./gpbench/method_reg/EIR_r/utils/mlp_layers.py
./gpbench/method_reg/EIR_r/utils/models_locally_connected.py
./gpbench/method_reg/EIR_r/utils/transformer_models.py
./gpbench/method_reg/ElasticNet_r/ElasticNet.py
./gpbench/method_reg/ElasticNet_r/ElasticNet_he.py
./gpbench/method_reg/ElasticNet_r/__init__.py
./gpbench/method_reg/G2PDeep_r/G2PDeep_Hyperparameters.py
./gpbench/method_reg/G2PDeep_r/G2Pdeep.py
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./gpbench/method_reg/G2PDeep_r/base_G2PDeep.py
./gpbench/method_reg/GBLUP_r/GBLUP_R.py
./gpbench/method_reg/GBLUP_r/__init__.py
./gpbench/method_reg/GEFormer_r/GEFormer.py
./gpbench/method_reg/GEFormer_r/GEFormer_Hyperparameters.py
./gpbench/method_reg/GEFormer_r/__init__.py
./gpbench/method_reg/GEFormer_r/gMLP.py
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./gpbench/method_reg/LightGBM_r/LightGBM_Hyperparameters.py
./gpbench/method_reg/LightGBM_r/__init__.py
./gpbench/method_reg/MVP_r/MVP.py
./gpbench/method_reg/MVP_r/MVP_Hyperparameters.py
./gpbench/method_reg/MVP_r/__init__.py
./gpbench/method_reg/MVP_r/base_MVP.py
./gpbench/method_reg/RF_r/RF_GPU.py
./gpbench/method_reg/RF_r/RF_Hyperparameters.py
./gpbench/method_reg/RF_r/__init__.py
./gpbench/method_reg/SVC_r/SVC_GPU.py
./gpbench/method_reg/SVC_r/SVC_Hyperparameters.py
./gpbench/method_reg/SVC_r/__init__.py
./gpbench/method_reg/SoyDNGP_r/AlexNet_206.py
./gpbench/method_reg/SoyDNGP_r/SoyDNGP.py
./gpbench/method_reg/SoyDNGP_r/SoyDNGP_Hyperparameters.py
./gpbench/method_reg/SoyDNGP_r/__init__.py
./gpbench/method_reg/XGBoost_r/XGboost_GPU.py
./gpbench/method_reg/XGBoost_r/XGboost_Hyperparameters.py
./gpbench/method_reg/XGBoost_r/__init__.py
./gpbench/method_reg/rrBLUP_r/__init__.py
./gpbench/method_reg/rrBLUP_r/rrBLUP.py
./tests/test_import.py
./tests/test_method.py
gp_agent_tool/compute_dataset_feature.py
gp_agent_tool/config.py
gp_agent_tool/llm_client.py
gp_agent_tool/logging_utils.py
gp_agent_tool/main.py
gp_agent_tool/experience/create_masked_dataset_summary.py
gp_agent_tool/experience/dataset_summary_info.py
gp_agent_tool/experience/experience_info.py
gp_agent_tool/experience/get_matched_experience.py
gp_agent_tool/read_agent/__init__.py
gp_agent_tool/read_agent/nodes.py
gp_agent_tool/read_agent/prompts.py
gp_agent_tool/read_agent/python_repl_tool.py
gp_agent_tool/read_agent/state.py
gp_agent_tool/read_agent/workflow.py
gpbench/__init__.py
gpbench/_selftest.py
gpbench.egg-info/PKG-INFO
gpbench.egg-info/SOURCES.txt
gpbench.egg-info/dependency_links.txt
gpbench.egg-info/entry_points.txt
gpbench.egg-info/requires.txt
gpbench.egg-info/top_level.txt
gpbench/method_class/__init__.py
gpbench/method_class/BayesA_c/BayesA_class.py
gpbench/method_class/BayesA_c/__init__.py
gpbench/method_class/BayesA_c/_bayesfromR.py
gpbench/method_class/BayesA_c/_param_free_base_model.py
gpbench/method_class/BayesA_c/bayesAfromR.py
gpbench/method_class/BayesB_c/BayesB_class.py
gpbench/method_class/BayesB_c/__init__.py
gpbench/method_class/BayesB_c/_bayesfromR.py
gpbench/method_class/BayesB_c/_param_free_base_model.py
gpbench/method_class/BayesB_c/bayesBfromR.py
gpbench/method_class/BayesC_c/BayesC_class.py
gpbench/method_class/BayesC_c/__init__.py
gpbench/method_class/BayesC_c/_bayesfromR.py
gpbench/method_class/BayesC_c/_param_free_base_model.py
gpbench/method_class/BayesC_c/bayesCfromR.py
gpbench/method_class/CropARNet_c/CropARNet_class.py
gpbench/method_class/CropARNet_c/CropARNet_he_class.py
gpbench/method_class/CropARNet_c/__init__.py
gpbench/method_class/CropARNet_c/base_CropARNet_class.py
gpbench/method_class/Cropformer_c/Cropformer_class.py
gpbench/method_class/Cropformer_c/__init__.py
gpbench/method_class/Cropformer_c/cropformer_he_class.py
gpbench/method_class/DL_GWAS_c/DL_GWAS_class.py
gpbench/method_class/DL_GWAS_c/DL_GWAS_he_class.py
gpbench/method_class/DL_GWAS_c/__init__.py
gpbench/method_class/DNNGP_c/DNNGP_class.py
gpbench/method_class/DNNGP_c/DNNGP_he_class.py
gpbench/method_class/DNNGP_c/__init__.py
gpbench/method_class/DNNGP_c/base_dnngp_class.py
gpbench/method_class/DeepCCR_c/DeepCCR_class.py
gpbench/method_class/DeepCCR_c/DeepCCR_he_class.py
gpbench/method_class/DeepCCR_c/__init__.py
gpbench/method_class/DeepCCR_c/base_DeepCCR_class.py
gpbench/method_class/DeepGS_c/DeepGS_class.py
gpbench/method_class/DeepGS_c/DeepGS_he_class.py
gpbench/method_class/DeepGS_c/__init__.py
gpbench/method_class/DeepGS_c/base_deepgs_class.py
gpbench/method_class/EIR_c/EIR_class.py
gpbench/method_class/EIR_c/EIR_he_class.py
gpbench/method_class/EIR_c/__init__.py
gpbench/method_class/EIR_c/utils/__init__.py
gpbench/method_class/EIR_c/utils/array_output_modules.py
gpbench/method_class/EIR_c/utils/common.py
gpbench/method_class/EIR_c/utils/lcl_layers.py
gpbench/method_class/EIR_c/utils/logging.py
gpbench/method_class/EIR_c/utils/mlp_layers.py
gpbench/method_class/EIR_c/utils/models_locally_connected.py
gpbench/method_class/EIR_c/utils/transformer_models.py
gpbench/method_class/ElasticNet_c/ElasticNet_class.py
gpbench/method_class/ElasticNet_c/ElasticNet_he_class.py
gpbench/method_class/ElasticNet_c/__init__.py
gpbench/method_class/G2PDeep_c/G2PDeep_he_class.py
gpbench/method_class/G2PDeep_c/G2Pdeep_class.py
gpbench/method_class/G2PDeep_c/__init__.py
gpbench/method_class/G2PDeep_c/base_G2PDeep_class.py
gpbench/method_class/GBLUP_c/GBLUP_class.py
gpbench/method_class/GBLUP_c/__init__.py
gpbench/method_class/GEFormer_c/GEFormer_class.py
gpbench/method_class/GEFormer_c/GEFormer_he_class.py
gpbench/method_class/GEFormer_c/__init__.py
gpbench/method_class/GEFormer_c/gMLP_class.py
gpbench/method_class/LightGBM_c/LightGBM_class.py
gpbench/method_class/LightGBM_c/LightGBM_he_class.py
gpbench/method_class/LightGBM_c/__init__.py
gpbench/method_class/RF_c/RF_GPU_class.py
gpbench/method_class/RF_c/RF_GPU_he_class.py
gpbench/method_class/RF_c/__init__.py
gpbench/method_class/SVC_c/SVC_GPU.py
gpbench/method_class/SVC_c/SVC_GPU_he.py
gpbench/method_class/SVC_c/__init__.py
gpbench/method_class/SoyDNGP_c/AlexNet_206_class.py
gpbench/method_class/SoyDNGP_c/SoyDNGP_class.py
gpbench/method_class/SoyDNGP_c/SoyDNGP_he_class.py
gpbench/method_class/SoyDNGP_c/__init__.py
gpbench/method_class/XGBoost_c/XGboost_GPU_class.py
gpbench/method_class/XGBoost_c/XGboost_GPU_he_class.py
gpbench/method_class/XGBoost_c/__init__.py
gpbench/method_class/rrBLUP_c/__init__.py
gpbench/method_class/rrBLUP_c/rrBLUP_class.py
gpbench/method_reg/__init__.py
gpbench/method_reg/BayesA_r/BayesA.py
gpbench/method_reg/BayesA_r/__init__.py
gpbench/method_reg/BayesA_r/_bayesfromR.py
gpbench/method_reg/BayesA_r/_param_free_base_model.py
gpbench/method_reg/BayesA_r/bayesAfromR.py
gpbench/method_reg/BayesB_r/BayesB.py
gpbench/method_reg/BayesB_r/__init__.py
gpbench/method_reg/BayesB_r/_bayesfromR.py
gpbench/method_reg/BayesB_r/_param_free_base_model.py
gpbench/method_reg/BayesB_r/bayesBfromR.py
gpbench/method_reg/BayesC_r/BayesC.py
gpbench/method_reg/BayesC_r/__init__.py
gpbench/method_reg/BayesC_r/_bayesfromR.py
gpbench/method_reg/BayesC_r/_param_free_base_model.py
gpbench/method_reg/BayesC_r/bayesCfromR.py
gpbench/method_reg/CropARNet_r/CropARNet.py
gpbench/method_reg/CropARNet_r/CropARNet_Hyperparameters.py
gpbench/method_reg/CropARNet_r/__init__.py
gpbench/method_reg/CropARNet_r/base_CropARNet.py
gpbench/method_reg/Cropformer_r/Cropformer.py
gpbench/method_reg/Cropformer_r/Cropformer_Hyperparameters.py
gpbench/method_reg/Cropformer_r/__init__.py
gpbench/method_reg/DL_GWAS_r/DL_GWAS.py
gpbench/method_reg/DL_GWAS_r/DL_GWAS_Hyperparameters.py
gpbench/method_reg/DL_GWAS_r/__init__.py
gpbench/method_reg/DNNGP_r/DNNGP.py
gpbench/method_reg/DNNGP_r/DNNGP_Hyperparameters.py
gpbench/method_reg/DNNGP_r/__init__.py
gpbench/method_reg/DNNGP_r/base_dnngp.py
gpbench/method_reg/DeepCCR_r/DeepCCR.py
gpbench/method_reg/DeepCCR_r/DeepCCR_Hyperparameters.py
gpbench/method_reg/DeepCCR_r/__init__.py
gpbench/method_reg/DeepCCR_r/base_DeepCCR.py
gpbench/method_reg/DeepGS_r/DeepGS.py
gpbench/method_reg/DeepGS_r/DeepGS_Hyperparameters.py
gpbench/method_reg/DeepGS_r/__init__.py
gpbench/method_reg/DeepGS_r/base_deepgs.py
gpbench/method_reg/EIR_r/EIR.py
gpbench/method_reg/EIR_r/EIR_Hyperparameters.py
gpbench/method_reg/EIR_r/__init__.py
gpbench/method_reg/EIR_r/utils/__init__.py
gpbench/method_reg/EIR_r/utils/array_output_modules.py
gpbench/method_reg/EIR_r/utils/common.py
gpbench/method_reg/EIR_r/utils/lcl_layers.py
gpbench/method_reg/EIR_r/utils/logging.py
gpbench/method_reg/EIR_r/utils/mlp_layers.py
gpbench/method_reg/EIR_r/utils/models_locally_connected.py
gpbench/method_reg/EIR_r/utils/transformer_models.py
gpbench/method_reg/ElasticNet_r/ElasticNet.py
gpbench/method_reg/ElasticNet_r/ElasticNet_he.py
gpbench/method_reg/ElasticNet_r/__init__.py
gpbench/method_reg/G2PDeep_r/G2PDeep_Hyperparameters.py
gpbench/method_reg/G2PDeep_r/G2Pdeep.py
gpbench/method_reg/G2PDeep_r/__init__.py
gpbench/method_reg/G2PDeep_r/base_G2PDeep.py
gpbench/method_reg/GBLUP_r/GBLUP_R.py
gpbench/method_reg/GBLUP_r/__init__.py
gpbench/method_reg/GEFormer_r/GEFormer.py
gpbench/method_reg/GEFormer_r/GEFormer_Hyperparameters.py
gpbench/method_reg/GEFormer_r/__init__.py
gpbench/method_reg/GEFormer_r/gMLP.py
gpbench/method_reg/LightGBM_r/LightGBM.py
gpbench/method_reg/LightGBM_r/LightGBM_Hyperparameters.py
gpbench/method_reg/LightGBM_r/__init__.py
gpbench/method_reg/MVP_r/MVP.py
gpbench/method_reg/MVP_r/MVP_Hyperparameters.py
gpbench/method_reg/MVP_r/__init__.py
gpbench/method_reg/MVP_r/base_MVP.py
gpbench/method_reg/RF_r/RF_GPU.py
gpbench/method_reg/RF_r/RF_Hyperparameters.py
gpbench/method_reg/RF_r/__init__.py
gpbench/method_reg/SVC_r/SVC_GPU.py
gpbench/method_reg/SVC_r/SVC_Hyperparameters.py
gpbench/method_reg/SVC_r/__init__.py
gpbench/method_reg/SoyDNGP_r/AlexNet_206.py
gpbench/method_reg/SoyDNGP_r/SoyDNGP.py
gpbench/method_reg/SoyDNGP_r/SoyDNGP_Hyperparameters.py
gpbench/method_reg/SoyDNGP_r/__init__.py
gpbench/method_reg/XGBoost_r/XGboost_GPU.py
gpbench/method_reg/XGBoost_r/XGboost_Hyperparameters.py
gpbench/method_reg/XGBoost_r/__init__.py
gpbench/method_reg/rrBLUP_r/__init__.py
gpbench/method_reg/rrBLUP_r/rrBLUP.py
tests/test_import.py
tests/test_method.py