0 |
analysisVersion |
str |
|
|
|
|
Analysis version when analysis was run. See sanpy.analysisVersion |
1 |
interfaceVersion |
str |
|
|
|
|
Interface version string when analysis was run. See sanpy.interfaceVersion |
2 |
file |
str |
|
|
|
|
Name of raw data file analyzed |
3 |
detectionType |
|
None |
|
|
|
Type of detection, either vm or dvdt. See enum sanpy.bDetection.detectionTypes |
4 |
cellType |
str |
|
|
|
|
User specified cell type |
5 |
sex |
str |
|
|
|
|
User specified sex |
6 |
condition |
str |
|
|
|
|
User specified condition |
7 |
sweep |
int |
0 |
|
|
|
Sweep number of analyzed sweep. Zero based. |
8 |
sweepSpikeNumber |
int |
None |
|
|
|
Spike number within the sweep. Zero based. |
9 |
spikeNumber |
int |
None |
|
|
|
Spike number across all sweeps. Zero based. |
10 |
include |
bool |
True |
|
|
|
Boolean indication include or not. Can be set by user/programatically after analysis. |
11 |
userType |
int |
0 |
|
|
|
Integer indication user type. Can be set by user/programatically after analysis. |
12 |
errors |
list |
[] |
|
|
|
List of dictionary to hold detection errors for this spike |
13 |
dvdtThreshold |
float |
NaN |
dvdt |
dvdtThreshold |
|
AP Threshold in derivative dv/dt |
14 |
mvThreshold |
float |
NaN |
mV |
mvThreshold |
|
AP Threshold in primary recording mV |
15 |
medianFilter |
int |
0 |
|
medianFilter |
|
Median filter to generate filtered vm and dvdt. Value 0 indicates no filter. |
16 |
halfHeights |
list |
[] |
|
halfHeights |
|
List of int to specify half-heights like [10, 20, 50, 80, 90]. |
17 |
thresholdPnt |
int |
NaN |
point |
|
|
AP threshold point |
18 |
thresholdSec |
float |
NaN |
sec |
|
|
AP threshold seconds |
19 |
thresholdVal |
float |
NaN |
mV |
|
|
Value of Vm at AP threshold point. |
20 |
thresholdVal_dvdt |
float |
NaN |
dvdt |
|
|
Value of dvdt at AP threshold point. |
21 |
dacCommand |
float |
NaN |
mV |
|
|
Value of DAC command at AP threshold point. |
22 |
peakPnt |
int |
NaN |
point |
(onlyPeaksAbove_mV, peakWindow_ms) |
|
AP peak point. |
23 |
peakSec |
float |
NaN |
sec |
|
|
AP peak seconds. |
24 |
peakVal |
float |
NaN |
mV |
|
|
Value of Vm at AP peak point. |
25 |
peakHeight |
float |
NaN |
mV |
|
|
Difference between peakVal minus thresholdVal. |
26 |
preMinPnt |
int |
NaN |
point |
mdp_ms |
|
Minimum before an AP taken from predefined window. |
27 |
preMinVal |
float |
NaN |
mV |
|
|
Minimum before an AP taken from predefined window. |
28 |
preLinearFitPnt0 |
int |
NaN |
point |
|
|
Point where pre linear fit starts. Used for EDD Rate |
29 |
preLinearFitPnt1 |
int |
NaN |
point |
|
|
Point where pre linear fit stops. Used for EDD Rate |
30 |
earlyDiastolicDuration_ms |
float |
NaN |
ms |
|
|
Time (ms) between start/stop of EDD. |
31 |
preLinearFitVal0 |
float |
NaN |
mv |
|
|
|
32 |
preLinearFitVal1 |
float |
NaN |
mv |
|
|
|
33 |
earlyDiastolicDurationRate |
float |
NaN |
mv/S |
|
|
Early diastolic duration rate, the slope of the linear fit between start/stop of EDD. |
34 |
lateDiastolicDuration |
float |
NaN |
|
|
|
TODO: Not sure this is implemented |
35 |
preSpike_dvdt_max_pnt |
int |
NaN |
point |
|
|
Point corresponding to peak in dv/dt before an AP. |
36 |
preSpike_dvdt_max_val |
float |
NaN |
mV |
|
|
Value of Vm at peak of dv/dt before an AP. |
37 |
preSpike_dvdt_max_val2 |
float |
NaN |
dv/dt |
|
|
Value of dv/dt at peak of dv/dt before an AP. |
38 |
postSpike_dvdt_min_pnt |
int |
NaN |
point |
dvdtPostWindow_ms |
|
Point corresponding to min in dv/dt after an AP. |
39 |
postSpike_dvdt_min_val |
float |
NaN |
mV |
|
|
Value of Vm at minimum of dv/dt after an AP. |
40 |
postSpike_dvdt_min_val2 |
float |
NaN |
dvdt |
|
|
Value of dv/dt at minimum of dv/dt after an AP. |
41 |
isi_pnts |
int |
NaN |
point |
refractory_ms |
|
Inter-Spike-Interval (points) with respect to previous AP. |
42 |
isi_ms |
float |
NaN |
ms |
|
|
Inter-Spike-Interval (ms) with respect to previous AP. |
43 |
spikeFreq_hz |
float |
NaN |
Hz |
|
|
AP frequency with respect to previous AP. |
44 |
cycleLength_pnts |
int |
NaN |
point |
|
|
Points between APs with respect to previous AP. |
45 |
cycleLength_ms |
int |
NaN |
point |
|
|
Time (ms) between APs with respect to previous AP. |
46 |
diastolicDuration_ms |
float |
NaN |
ms |
|
|
Time (ms) between minimum before AP (preMinPnt) and AP time (thresholdPnt). |
47 |
widths |
list |
NaN |
|
|
|
A list of dict to hold half-height information for each half-height in detection halfHeights. |
48 |
widths_10 |
int |
NaN |
percent |
halfWidthWindow_ms |
|
Width (ms) at half-height 10 %. |
49 |
widths_20 |
int |
NaN |
percent |
halfWidthWindow_ms |
|
Width (ms) at half-height 20 %. |
50 |
widths_50 |
int |
NaN |
percent |
halfWidthWindow_ms |
|
Width (ms) at half-height 50 %. |
51 |
widths_80 |
int |
NaN |
percent |
halfWidthWindow_ms |
|
Width (ms) at half-height 80 %. |
52 |
widths_90 |
int |
NaN |
percent |
halfWidthWindow_ms |
|
Width (ms) at half-height 90 %. |