Metadata-Version: 2.4
Name: coremof_tools
Version: 0.3.5
Summary: Python API for CoRE MOF DB
Author: Guobin Zhao
Author-email: sxmzhaogb@gmail.com
License: CC-BY-4.0
Project-URL: Homepage, https://coremof-tools.readthedocs.io/
Project-URL: Repository, https://github.com/sxm13/CoREMOF_tools
Project-URL: Issues, https://github.com/mtap-research/CoRE-MOF-Tools/issues
Project-URL: PyPI, https://pypi.org/project/CoREMOF-tools/
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Chemistry
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.9, <4
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pymatgen
Requires-Dist: ase
Requires-Dist: juliacall
Requires-Dist: molSimplify==1.8.0
Requires-Dist: PACMAN-charge
Requires-Dist: cloudpickle
Requires-Dist: matminer
Requires-Dist: xgboost
Requires-Dist: scikit-learn==1.3.2
Requires-Dist: gemmi==0.7.0
Requires-Dist: phonopy
Requires-Dist: networkx
Requires-Dist: selfies
Requires-Dist: mendeleev
Requires-Dist: requests
Requires-Dist: MOFClassifier==0.1.1
Provides-Extra: zeopp
Requires-Dist: zeopp-lsmo; extra == "zeopp"
Provides-Extra: openbabel
Requires-Dist: openbabel-wheel; extra == "openbabel"
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: license
Dynamic: license-file
Dynamic: project-url
Dynamic: provides-extra
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<div align="center">
<img src="https://raw.githubusercontent.com/sxm13/pypi-dev/main/logos/coremof_tools.png" alt="CoRE MOF Tools logo" width="500"/>
</div> 
                                                             
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**Develop by [Guobin Zhao](https://github.com/sxm13)**                                     
                                                                 
The CoRE MOF database can be found in [Zenodo](https://zenodo.org/communities/core-mofs/records?q=&l=list&p=1&s=10)                                       
<div align="center">                   
<img src="https://raw.githubusercontent.com/sxm13/pypi-dev/main/logos/coremof.png" alt="CoRE MOF logo" width="500"/>
</div> 

                                                                                  
#### Installation                                                                                    
This API includes tools developed to collect, curate, and classify Computation-Ready, Experimental MOF database.    
a. You need to install the [CSD software and python API](https://downloads.ccdc.cam.ac.uk/documentation/API/installation_notes.html) before downloading the full CoRE MOF database.                                                            
b. For using CoREMOF.calculation.Zeopp, you need to input `conda install -c conda-forge zeopp-lsmo` to install Zeo++.   
c. For using CoREMOF.get_mofid, you need to install MOFid following the [manual](https://snurr-group.github.io/mofid/compiling/#installation).                    
d. For using CoREMOF.mof_check, you need to install MOFChecker by input `pip install git+https://github.com/sxm13/mofchecker_2.0.git@main`. 

#### Examples                                                                                     
Available at [Github](https://github.com/mtap-research/CoRE-MOF-Tools/tree/main/tests/examples) and [CoRE MOF Website](https://mof-db.pusan.ac.kr/API) to view examples.                         
                            

#### Citation                                          
- [CoRE MOF](https://doi.org/10.1016/j.matt.2025.102140): Zhao G, Brabson L, Chheda S, Huang J, Kim H, Liu K, et al. CoRE MOF DB: a curated experimental metal-organic framework database with machine-learned properties for integrated material-process screening. Matter, 8 (2025), 102140.                        
- [Zeo++](https://www.sciencedirect.com/science/article/pii/S1387181111003738): T.F. Willems, C.H. Rycroft, M. Kazi, J.C. Meza, and M. Haranczyk, Algorithms and tools for high-throughput geometry- based analysis of crystalline porous materials, Microporous and Mesoporous Materials, 149 (2012), 134-141.                            
- [Heat capacity](https://doi.org/10.1038/s41563-022-01374-3): Models from Moosavi, S.M., Novotny, B.A., Ongari, D. et al.A data-science approach to predict the heat capacity of nanoporous materials. Nat. Mater. 21 (2022), 1419-1425.
- [Water stability](https://pubs.acs.org/doi/full/10.1021/jacs.4c05879): Terrones G G, Huang S P, Rivera M P, et al. Metal-organic framework stability in water and harsh environments from data-driven models trained on the diverse WS24 data set. Journal of the American Chemical Society, 146 (2024), 20333-20348.
- [Activation and thermal stability](https://pubs.acs.org/doi/full/10.1021/jacs.1c07217): Nandy A, Duan C, Kulik H J. Using machine learning and data mining to leverage community knowledge for the engineering of stable metal-organic frameworks. Journal of the American Chemical Society, 143 (2021), 17535-17547.
- [MOFid-v1](https://pubs.acs.org/doi/full/10.1021/acs.cgd.9b01050): Bucior B J, Rosen A S, Haranczyk M, et al. Identification schemes for metal-organic frameworks to enable rapid search and cheminformatics analysis. Crystal Growth & Design, 19 (2019), 6682-6697.
- [PACMAN-charge](https://pubs.acs.org/doi/10.1021/acs.jctc.4c00434): Zhao G, Chung Y G. PACMAN: A Robust Partial Atomic Charge Predicter for Nanoporous Materials Based on Crystal Graph Convolution Networks. Journal of Chemical Theory and Computation, 20 (2024), 5368-5380.
- [Revised Autocorrelation](https://pubs.acs.org/doi/10.1021/acs.jpca.7b08750): Jon Paul Janet and Heather J. Kulik. Resolving Transition Metal Chemical Space: Feature Selection for Machine Learning and Structure-Property Relationships. The Journal of Physical Chemistry A. 121 (2017), 8939-8954. 
- [Topology](https://doi.org/10.21468/SciPostChem.1.2.005): Zoubritzky L, Coudert F X. CrystalNets. jl: identification of crystal topologies. SciPost Chemistry, 1 (2022), 005.
- [Chen_Manz](https://doi.org/10.1039/D0RA02498H): Chen T, Manz T.A. Identifying misbonded atoms in the 2019 CoRE metal–organic framework database. RSC Adv, 10 (2025), 26944-26951.
- [MOFChecker](https://doi.org/10.1039/D5DD00109A): JIN X, Jablonka K, Moubarak E, Li Y, Smit B. MOFChecker: An algorithm for Validating and Correcting Metal-Organic Framework (MOF) Structures. Digital Discovery, 4 (2025), 1560-1569.
- [MOSAEC](https://pubs.acs.org/doi/10.1021/jacs.5c04914): White A, Gibaldi M, Burner J, Mayo RA, Woo T. High Structural Error Rates in "Computation-Ready" MOF Databases Discovered by Checking Metal Oxidation States. JACS, 147 (2025), 17579-17583.                                     
- [MOFClassifier](https://pubs.acs.org/doi/10.1021/jacs.5c10126): Zhao G, Zhao P, Chung Y. G. MOFClassifier: A Machine Learning Approach for Validating Computation-Ready Metal-Organic Frameworks. JACS, 147 (2025), 33343-33349.                         
