README.md
app.py
preprocess.py
pyproject.toml
ADEX.egg-info/PKG-INFO
ADEX.egg-info/SOURCES.txt
ADEX.egg-info/dependency_links.txt
ADEX.egg-info/entry_points.txt
ADEX.egg-info/requires.txt
ADEX.egg-info/top_level.txt
assets/__init__.py
assets/css/dbc.min.css
assets/css/layout.css
assets/css/markdown.css
assets/css/sidebar.css
assets/css/startup_modal.css
assets/images/AI_lens_black.svg
assets/images/AI_lens_white.svg
assets/images/AI_medium_white.svg
assets/images/aifi-white-logo.png
assets/images/aifi-white-text.png
assets/images/aifi_logo.png
assets/images/screenshot.png
assets/images/template.png
assets/markdown/covariate-help.md
assets/markdown/help_page.md
assets/markdown/startup_modal.md
assets/markdown/template_help_page.md
assets/markdown/template_startup_modal.md
callbacks/__init__.py
callbacks/create_deg_callbacks.py
components/__init__.py
components/create_deg_components.py
config/__init__.py
config/template.json
config/gmt/c2.all.v2026.1.Hs.json.gz
config/gmt/h.all.v2026.1.Hs.json.gz
config/gmt/msigdb-all-pathways.json.gz
preprocessors/__init__.py
preprocessors/deseq2.py
preprocessors/gsea.py
preprocessors/pseudobulk.py
src/__init__.py
src/cli.py
src/deploy.py
src/utils.py
src/version.py
src/app/__init__.py
src/app/utils.py
src/app/version.py
src/app/components/ConfigSingleton.py
src/app/components/GenePanel.py
src/app/components/RadioButtons.py
src/app/components/StartupModal.py
src/app/components/__init__.py
src/app/components/app_header.py
src/app/components/app_help.py
src/app/components/app_settings.py
src/app/components/dropdown.py
src/app/plots/BoxPlot.py
src/app/plots/DegSummariesPlot.py
src/app/plots/HeatmapAIO.py
src/app/plots/MAPlot.py
src/app/plots/Volcano.py
src/app/plots/__init__.py
src/mediators/GeneSelectionMediator.py
src/mediators/PathwaySelectionMediator.py
src/mediators/__init__.py
src/readers/DegByCovariatesReader.py
src/readers/Deseq2Readers.py
src/readers/PseudoBulkLoader.py
src/readers/__init__.py
tests/test_reader_barcode_splitting.py
ui/__init__.py
ui/create_deg_layout.py