.gitignore
LICENSE
MANIFEST.in
README.md
main.py
pyproject.toml
sample_config.json
simble/__init__.py
simble/cell.py
simble/chain.py
simble/dev_helper.py
simble/helper.py
simble/location.py
simble/parsing.py
simble/settings.py
simble/simble.py
simble/simulation.py
simble/target.py
simble/tree.py
simble.egg-info/PKG-INFO
simble.egg-info/SOURCES.txt
simble.egg-info/dependency_links.txt
simble.egg-info/entry_points.txt
simble.egg-info/requires.txt
simble.egg-info/top_level.txt
simble/data/README.md
simble/data/__init__.py
simble/data/clean_naive.py
simble/data/hh_sf5.csv
simble/data/hh_sf5_substitution.csv
simble/data/hkl_sf5.csv
simble/data/hkl_sf5_substitution.csv
simble/data/naive_heavy_chain.tsv
simble/data/naive_heavy_chain_filtered_no_mutations.tsv
simble/data/naive_light_chain.tsv
simble/data/naive_light_chain_filtered_no_mutations.tsv
simble/data/naive_pairs_filtered.csv
simble/data/__pycache__/__init__.cpython-312.pyc
simble/data/__pycache__/clean_naive.cpython-312.pyc
tests/__init__.py
tests/test_seeds.py