biopython>=1.85
numpy>=2.0
scipy>=1.15
pandas>=2.3
scikit-learn>=1.7
seaborn>=0.13
matplotlib>=3.10
sty>=1.0
importlib_resources>=6.4
dill>=0.4

[all]
melodia-py[fast]
melodia-py[parallel]
melodia-py[mdanalysis]
melodia-py[dev]

[dev]
pytest>=8.0
pytest-cov>=5.0
mypy>=1.10
ruff>=0.4
pre-commit>=3.7
types-setuptools

[fast]
numba>=0.59
llvmlite>=0.42

[mdanalysis]
MDAnalysis>=2.7

[parallel]
joblib>=1.4
