Basic info
Basic info--1.Basic sample information
| Measure | Value |
|---|---|
| Read1 name | {{ Read1_name }} |
| Read2 name | {{ Read2_name }} |
| Read1 num | {{ Read1_num }} |
| Read2 num | {{ Read2_num }} |
| Read1 size | {{ Read1_size }} |
| Read2 size | {{ Read2_size }} |
| Clean read1 | {{ clean_read1 }} |
| Clean read2 | {{ clean_read2 }} |
| Original sam | {{ original_sam }} |
| Unmapped sam | {{ unmapped_sam }} |
| Uniquemapped sam | {{ uniquemapped_sam }} |
| Forward bw | {{ forward_bw }} |
| Reverse bw | {{ reverse_bw }} |
Accessment
Accessment--1.Nascent RNA reads quality
| Measure | Value |
|---|---|
| Reads with adapter | {{ Reads_with_adapter }} |
| Uninformative adapter reads | {{ Uninformative_adapter_reads }} |
| Percent of uninformative adapter reads | {{ Pct_uninformative_adapter_reads }} |
| Peak adapter insertion size | {{ Peak_adapter_insertion_size }} |
| Adapter loss rate | {{ Adapter_loss_rate }} |
| Degradation ratio | {{ Degradation_ratio }} |
| Trimmed reads | {{ Trimmed_reads }} |
| Trim loss rate | {{ Trim_loss_rate }} |
| Reads with polyX | {{ Reads_with_polyX }} |
| Uninformative polyX reads | {{ Uninformative_polyX_reads }} |
Accessment--2.Nascent RNA mapping quality
| Measure | Value |
|---|---|
| assign mapped | {{ assign_mapped }} |
| NRF | {{ NRF }} |
| PBC1 | {{ PBC1 }} |
| PBC2 | {{ PBC2 }} |
| chrM_mapped | {{ chrM_mapped }} |
Accessment--3.Adapter insertion_distribution
Accessment--4.Reads distribution
Accessment--5.Reads ratio
Accessment--6.Split mapping results
Accessment--7.Exon/Intron ratio on Protein-coding genes
Nacent RNA expression
Nacent RNA expression--1.Expression output files
| Measure | Value |
|---|---|
| all feature attrs | {{ all_feature_attrs_csv }} |
| exon intron ratio | {{ exon_intron_ratio_csv }} |
| lincRNA baseCount | {{ lincRNA_baseCount_csv }} |
| lincRNA gene body count | {{ lincRNA_gb_count_csv }} |
| lincRNA proximal promoter count | {{ lincRNA_pp_count_csv }} |
| lincRNA rpkm | {{ lincRNA_rpkm_csv }} |
| protein coding baseCount | {{ protein_coding_baseCount_csv }} |
| protein coding gb count | {{ protein_coding_gb_count_csv }} |
| protein coding pp count | {{ protein_coding_pp_count_csv }} |
| protein coding rpkm | {{ protein_coding_rpkm_csv }} |
Nacent RNA expression--2.Gene expression on different chromosomes
Pausing analysis
Pausing analysis--1.pausing analysis results table
| Measure | Value |
|---|---|
| pausing sites | {{ pausing_sites_bed }} |
| pausing sites | {{ pausing_sites_bed }} |
| lincRNA ei | {{ lincRNA_ei_csv }} |
| lincRNA pi | {{ lincRNA_pi_csv }} |
| protein coding ei | {{ protein_coding_ei_csv }} |
| protein coding pi | {{ protein_coding_pi_csv }} |
Pausing analysis--2.Pausing sites distribution on different chromosomes
Gene regulatory network
Gene regulatory network--1 In-degree distribution
Gene regulatory network--2 Motif distribution
Gene regulatory network--3 Community analysis
All identifying communities can be found at txt directory