numpy==1.26.4
pandas<2.2.3,>=2.0
scipy==1.13.1
matplotlib==3.9.4
seaborn==0.13.2
scikit-learn==1.6.1
torch==2.8.0
torchvision==0.23.0
torchmetrics==1.8.2
pytorch-lightning==2.5.6
lightning==2.5.6
lightning-utilities==0.15.2
tensorflow==2.20.0
keras==3.10.0
tensorboard==2.20.0
tensorboard-data-server==0.7.2
xgboost==2.1.4
lightgbm==4.6.0
optuna==2.10.0
umap-learn==0.5.9.post2
pynndescent==0.5.13
langchain-core==0.3.82
langchain-openai==0.3.35
langgraph==0.6.11
langgraph-checkpoint==2.1.2
langgraph-prebuilt==0.6.5
langgraph-sdk==0.2.9
langsmith==0.4.37
openai==2.8.1
dashscope==1.25.7
tiktoken==0.12.0
transformers==4.57.3
tokenizers==0.22.1
huggingface-hub==0.36.0
psutil==7.1.3
tqdm==4.67.1
pyyaml==6.0.3
requests==2.32.5
requests-toolbelt==1.0.0
python-dotenv==1.2.1
rich==13.9.4
rich-argparse==1.7.2
pyecharts==2.0.9
h5py==3.14.0
pandas-plink==2.2.9
xarray==2024.7.0
statsmodels==0.14.5
patsy==1.0.2
rpy2==3.5.16
aiohttp==3.13.2
httpx==0.28.1
httpcore==1.0.9
anyio==4.12.0
orjson==3.11.5
ormsgpack==1.11.0
simplejson==3.20.2
protobuf==6.33.0
flatbuffers==25.9.23
sympy==1.14.0
mpmath==1.3.0
opt-einsum==3.4.0
cmaes==0.12.0
flaml==2.3.6
pyro-api==0.1.2
pyro-ppl==1.9.1
fsspec==2025.10.0
filelock==3.19.1
diskcache==5.6.3
platformdirs==4.4.0
distro==1.9.0
pydantic==2.12.4
pydantic-core==2.41.5
typing-extensions==4.15.0
typing-inspection==0.4.2
annotated-types==0.7.0
pytest==8.4.2
pytest-cov==7.0.0
coverage==7.10.7
joblib==1.5.2
threadpoolctl==3.6.0
networkx==3.2.1
einops==0.8.1
triton==3.4.0
safetensors==0.7.0
ml-dtypes==0.5.3
tenacity==9.1.2
xxhash==3.6.0
xlsxwriter==3.2.9
aislib==0.1.14a0
swanlab==0.7.6
psutil==7.1.3

[cuda]
nvidia-cublas-cu12==12.8.4.1
nvidia-cuda-cupti-cu12==12.8.90
nvidia-cuda-nvrtc-cu12==12.8.93
nvidia-cuda-runtime-cu12==12.8.90
nvidia-cudnn-cu12==9.10.2.21
nvidia-cufft-cu12==11.3.3.83
nvidia-cufile-cu12==1.13.1.3
nvidia-curand-cu12==10.3.9.90
nvidia-cusolver-cu12==11.7.3.90
nvidia-cusparse-cu12==12.5.8.93
nvidia-cusparselt-cu12==0.7.1
nvidia-ml-py==13.580.82
nvidia-nccl-cu12==2.27.3
nvidia-nvjitlink-cu12==12.8.93
nvidia-nvtx-cu12==12.8.90

[dev]
black>=22.0.0
flake8>=4.0.0
mypy>=1.0.0

[extra]
autogen-agentchat==0.2.40
swanlab==0.7.6
docker==7.1.0
boto3==1.40.69
botocore==1.40.69
s3transfer==0.14.0
