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0.5.1pre-0.6
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Index

_ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W | X | Z

_

__init__() (nipype.caching.memory.PipeFunc method)

A

Add
AddCSVColumn
AffineRegistration
Allineate
Analyze2nii
AnalyzeHeader
ApplyDeformations
ApplyMask, [1]
ApplyVolTransform
ApplyWarp
ApplyXfm
ArtifactDetect
AssertEqual
Automask
AverageNetworks

B

BBRegister
BEDPOSTX
BET
Binarize
BinaryMaths
BRAINSDemonWarp
BRAINSFit
BRAINSResample
BRAINSROIAuto
BrickStat
BSplineDeformableRegistration
BuildTemplate

C

cache() (nipype.caching.Memory method)
Calc
Camino2Trackvis
Cast
CFFConverter
ChangeDataType
CheckerBoard
clear_previous_runs() (nipype.caching.Memory method)
clear_runs_since() (nipype.caching.Memory method)
Cluster
CoherenceAnalyzer
ComputeEigensystem
ComputeFractionalAnisotropy
ComputeMask
ComputeMeanDiffusivity
ComputeSUVBodyWeight
ComputeTensorTrace
Concatenate
ConfidenceConnected
Conmap
ConstrainedSphericalDeconvolution
ContrastMgr
ConvertXFM
Copy
Coregister
CreateMatrix
CreateNifti
CreateNodes
CreateWarped
CurvatureAnisotropicDiffusion

D

DARTEL
DARTELNorm2MNI
DataGrabber
DataSink
Dcm2nii
Despike
Detrend
DICOMConvert
DicomToNrrdConverter
DiffusionTensorEstimation
DiffusionTensorMathematics
DiffusionTensorStreamlineTrack
DiffusionTensorTest
DiffusionWeightedMasking
DilateImage
Distance
DistanceMap
DT2NIfTI
DTIFit, [1]
DTIRecon
DTITracker
DTLUTGen
DWI2SphericalHarmonicsImage
DWI2Tensor
dwiNoiseFilter
dwiUNLM

E

EddyCorrect
Erode
ErodeImage
EstimateContrast, [1]
EstimateModel
EstimateResponseForSH
extractNrrdVectorIndex
ExtractROI

F

FactorialDesign
FAST
FEAT
FEATModel
FEATRegister
FILMGLS
FilterRegressor
Fim
FindTheBiggest
FIRST
FitGLM
FitMSParams
FLAMEO
FLIRT
FmriRealign4d
FNIRT
Fourier
FreeSurferSource
FUGUE
Function

G

GenerateWhiteMatterMask
GenWarpFields
GLMFit
gtractAnisotropyMap
gtractAverageBvalues
gtractClipAnisotropy
gtractConcatDwi
gtractCopyImageOrientation
gtractCoRegAnatomy
gtractCoregBvalues
gtractCostFastMarching
gtractImageConformity
gtractInvertBSplineTransform
gtractInvertDeformationField
gtractInvertRigidTransform
gtractResampleAnisotropy
gtractResampleB0
gtractResampleCodeImage
gtractResampleDWIInPlace
gtractTensor
gtractTransformToDeformationField
Gunzip

H

HARDIMat

I

IdentityInterface
Image2Voxel
ImageMaths
ImageMeants
ImageStats
IOBase
IsotropicSmooth

J

jointLMMSE

L

L2Model
Label2Vol
Level1Design, [1]

M

MakeDyadicVectors
Maskave
MathsCommand
Matlab2CSV
MCFLIRT
MeanImage
MedianFilter3D
MELODIC
Memory (class in nipype.caching)
Merge, [1], [2]
MergeCNetworks
MergeCSVFiles
ModelFit
ModifyAffine
MRConvert
MRIConvert
MRIMarchingCubes
MRIsConvert
MRISPreproc
MRITessellate
MRMultiply
MRTransform
MRTrix2TrackVis
MRTrixViewer
MultiImageMaths
MultipleRegressDesign
MultipleRegressionDesign

N

NetworkXMetrics
NewSegment
NIfTIDT2Camino
nipype.algorithms.misc (module)
nipype.algorithms.modelgen (module)
nipype.interfaces.cmtk.cmtk (module)
nipype.interfaces.cmtk.nx (module)
nipype.interfaces.cmtk.parcellation (module)
nipype.interfaces.io (module)
nipype.interfaces.mrtrix.convert (module)
nipype.interfaces.mrtrix.tensors (module)
nipype.pkg_info (module)
nipype.workflows.dmri.camino.connectivity_mapping (module)
nipype.workflows.dmri.camino.diffusion (module)
nipype.workflows.dmri.camino.group_connectivity (module)
nipype.workflows.dmri.connectivity.group_connectivity (module)
nipype.workflows.dmri.connectivity.nx (module)
nipype.workflows.dmri.fsl.dti (module)
nipype.workflows.dmri.fsl.tbss (module)
nipype.workflows.dmri.mrtrix.connectivity_mapping (module)
nipype.workflows.dmri.mrtrix.diffusion (module)
nipype.workflows.dmri.mrtrix.group_connectivity (module)
nipype.workflows.fmri.fsl.estimate (module)
nipype.workflows.fmri.fsl.preprocess (module)
nipype.workflows.fmri.spm.preprocess (module)
nipype.workflows.misc.utils (module)
nipype.workflows.rsfmri.fsl.resting (module)
nipype.workflows.smri.freesurfer.utils (module)
Normalize

O

ODFRecon
ODFTracker
OneSampleTTest
OneSampleTTestDesign
Overlap
Overlay

P

PairedTTestDesign
Parcellate
ParseDICOMDir
PickAtlas
PicoPDFs
PipeFunc (class in nipype.caching.memory)
PlotMotionParams
PlotTimeSeries
PowerSpectrum
PRELUDE
ProbabilisticSphericallyDeconvolutedStreamlineTrack
ProbTrackX
ProcStreamlines
ProjThresh

R

Randomise
Realign
ReconAll
Refit
Rename
Resample, [1]
ResampleDTI
RobustRegister
ROIGen
ROIStats

S

SampleToSurface
Segment
SegStats
Select
SimpleThreshold
SkullStrip
Slicer
SlicerCommandLine
SliceTimer
SliceTiming
SMM
Smooth, [1], [2]
SmoothEstimate
SpatialFilter
SpecifyModel
SpecifySparseModel
SphericallyDeconvolutedStreamlineTrack
SplineFilter
Split, [1]
SQLiteSink
StimulusCorrelation
StreamlineTrack
SurfaceSmooth
SurfaceSnapshots
SurfaceTransform
SUSAN
SwapDimensions
SynthesizeFLASH

T

TCat
TCorrelate
TemporalFilter
Tensor2ApparentDiffusion
Tensor2FractionalAnisotropy
Tensor2Vector
Threshold, [1], [2]
ThresholdStatistics
To3D
Track
TrackBallStick
TrackBayesDirac
TrackBootstrap
TrackDensityMap
TrackDT
TrackPICo
Tracks2Prob
Trackvis2Camino
TractShredder
TractSkeleton
TShift
TSNR
TStat
TwoSampleTTestDesign

U

UnaryMaths
UnpackSDICOMDir

V

VBRAINSDemonWarp
VecReg
Volreg
VtkStreamlines

W

Warp
WarpImageMultiTransform

X

XFibres
XNATSink
XNATSource

Z

ZCutUp