LICENSE
README.md
pyproject.toml
sortscore/__init__.py
sortscore/__main__.py
sortscore/cli.py
sortscore/run_analysis.py
sortscore/run_batch_analysis.py
sortscore.egg-info/PKG-INFO
sortscore.egg-info/SOURCES.txt
sortscore.egg-info/dependency_links.txt
sortscore.egg-info/entry_points.txt
sortscore.egg-info/requires.txt
sortscore.egg-info/top_level.txt
sortscore/analysis/__init__.py
sortscore/analysis/aa_scores.py
sortscore/analysis/annotation.py
sortscore/analysis/batch_config.py
sortscore/analysis/batch_normalization.py
sortscore/analysis/batch_workflow.py
sortscore/analysis/filtering.py
sortscore/analysis/normalize_read_depth.py
sortscore/analysis/score.py
sortscore/analysis/statistics.py
sortscore/analysis/summary_stats.py
sortscore/analysis/variant_aggregation.py
sortscore/analysis/workflows.py
sortscore/utils/analysis_logger.py
sortscore/utils/console_utils.py
sortscore/utils/experiment_setup.py
sortscore/utils/file_utils.py
sortscore/utils/load_experiment.py
sortscore/utils/sequence_parsing.py
sortscore/utils/tile_configs.py
sortscore/utils/variant_detection.py
sortscore/utils/variant_parsing.py
sortscore/visualization/__init__.py
sortscore/visualization/correlations.py
sortscore/visualization/heatmap_matrix.py
sortscore/visualization/heatmap_workflow.py
sortscore/visualization/heatmaps.py
sortscore/visualization/plots.py