README.cnv.md
pyproject.toml
ugbio_cnv/__init__.py
ugbio_cnv/analyze_cnv_breakpoint_reads.py
ugbio_cnv/annotate_FREEC_segments.py
ugbio_cnv/bicseq2_post_processing.py
ugbio_cnv/cnv_bed_format_utils.py
ugbio_cnv/cnv_vcf_consts.py
ugbio_cnv/combine_cnmops_cnvpytor_cnv_calls.py
ugbio_cnv/combine_cnv_vcf_utils.py
ugbio_cnv/jalign.py
ugbio_cnv/plot_FREEC_fold_change.py
ugbio_cnv/plot_FREEC_neutral_AF.py
ugbio_cnv/plot_cnv_results.py
ugbio_cnv/process_cnvs.py
ugbio_cnv/run_cnvpytor.py
ugbio_cnv/run_jalign.py
ugbio_cnv.egg-info/PKG-INFO
ugbio_cnv.egg-info/SOURCES.txt
ugbio_cnv.egg-info/dependency_links.txt
ugbio_cnv.egg-info/entry_points.txt
ugbio_cnv.egg-info/requires.txt
ugbio_cnv.egg-info/top_level.txt